Coexpression cluster: Cluster_47 (HCCA clusters)

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Average Expression Profile



Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 11.93% (26/218) 2.05 0.0 0.0
GO:0016070 RNA metabolic process 5.96% (13/218) 2.56 0.0 6.5e-05
GO:0017016 Ras GTPase binding 1.83% (4/218) 5.24 3e-06 0.000104
GO:0031267 small GTPase binding 1.83% (4/218) 5.24 3e-06 0.000104
GO:0097159 organic cyclic compound binding 16.06% (35/218) 1.21 3e-06 0.000134
GO:1901363 heterocyclic compound binding 16.06% (35/218) 1.21 3e-06 0.000134
GO:0008536 Ran GTPase binding 1.83% (4/218) 5.36 2e-06 0.000158
GO:0005852 eukaryotic translation initiation factor 3 complex 1.38% (3/218) 6.41 3e-06 0.000183
GO:0005488 binding 25.69% (56/218) 0.9 2e-06 0.0002
GO:0003723 RNA binding 4.13% (9/218) 2.75 9e-06 0.000268
GO:0006396 RNA processing 3.67% (8/218) 2.99 8e-06 0.000272
GO:0051020 GTPase binding 1.83% (4/218) 4.82 1e-05 0.00028
GO:0034660 ncRNA metabolic process 3.21% (7/218) 2.96 3.4e-05 0.000899
GO:0003674 molecular_function 33.03% (72/218) 0.61 6e-05 0.001452
GO:0006886 intracellular protein transport 2.29% (5/218) 3.53 7.1e-05 0.001611
GO:0019899 enzyme binding 1.83% (4/218) 4.07 8.8e-05 0.001876
GO:0051649 establishment of localization in cell 2.29% (5/218) 3.22 0.000204 0.002768
GO:0046907 intracellular transport 2.29% (5/218) 3.22 0.000204 0.002768
GO:0015031 protein transport 2.29% (5/218) 3.22 0.000204 0.002768
GO:0042886 amide transport 2.29% (5/218) 3.22 0.000204 0.002768
GO:0015833 peptide transport 2.29% (5/218) 3.22 0.000204 0.002768
GO:0034470 ncRNA processing 2.29% (5/218) 3.31 0.000147 0.002784
GO:0006725 cellular aromatic compound metabolic process 8.26% (18/218) 1.43 0.000141 0.002828
GO:1901360 organic cyclic compound metabolic process 8.26% (18/218) 1.41 0.000169 0.003022
GO:0045184 establishment of protein localization 2.29% (5/218) 3.17 0.000237 0.0031
GO:0008104 protein localization 2.29% (5/218) 3.15 0.000255 0.0031
GO:0033036 macromolecule localization 2.29% (5/218) 3.15 0.000255 0.0031
GO:0044424 intracellular part 6.88% (15/218) 1.57 0.000191 0.003249
GO:0051641 cellular localization 2.29% (5/218) 3.0 0.000415 0.004549
GO:0090304 nucleic acid metabolic process 5.96% (13/218) 1.6 0.000402 0.004557
GO:0046483 heterocycle metabolic process 7.8% (17/218) 1.36 0.000394 0.00462
GO:0044464 cell part 6.88% (15/218) 1.45 0.000454 0.004823
GO:0006139 nucleobase-containing compound metabolic process 7.34% (16/218) 1.36 0.000568 0.005852
GO:0003743 translation initiation factor activity 1.38% (3/218) 4.16 0.000592 0.005918
GO:0071705 nitrogen compound transport 2.29% (5/218) 2.82 0.000718 0.006978
GO:0005730 nucleolus 0.92% (2/218) 5.5 0.000762 0.007195
GO:0016072 rRNA metabolic process 1.38% (3/218) 3.89 0.001054 0.009429
GO:0006364 rRNA processing 1.38% (3/218) 3.89 0.001054 0.009429
GO:0071702 organic substance transport 2.29% (5/218) 2.69 0.001106 0.009641
GO:0005737 cytoplasm 1.83% (4/218) 3.12 0.001147 0.009746
GO:0140098 catalytic activity, acting on RNA 2.75% (6/218) 2.31 0.001389 0.011517
GO:0034641 cellular nitrogen compound metabolic process 7.8% (17/218) 1.17 0.00159 0.012868
GO:0043231 intracellular membrane-bounded organelle 2.29% (5/218) 2.47 0.002129 0.016451
GO:0043227 membrane-bounded organelle 2.29% (5/218) 2.47 0.002129 0.016451
GO:0043229 intracellular organelle 3.21% (7/218) 1.92 0.002706 0.020442
GO:0043226 organelle 3.21% (7/218) 1.9 0.002852 0.021079
GO:0008135 translation factor activity, RNA binding 1.38% (3/218) 3.36 0.003043 0.022012
GO:0005634 nucleus 1.83% (4/218) 2.6 0.004398 0.031153
GO:0006399 tRNA metabolic process 1.83% (4/218) 2.54 0.005057 0.035089
GO:0008173 RNA methyltransferase activity 0.92% (2/218) 4.12 0.005672 0.038569
GO:0005575 cellular_component 9.17% (20/218) 0.88 0.006483 0.043221
GO:0005515 protein binding 10.09% (22/218) 0.82 0.006878 0.044969
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_26 0.033 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_122 0.036 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_231 0.02 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_6 0.034 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_108 0.022 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_3 0.025 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_26 0.037 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_83 0.036 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_126 0.03 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_167 0.023 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_59 0.026 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_82 0.036 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_184 0.022 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_1 0.02 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_8 0.026 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_19 0.04 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_18 0.025 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_86 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_59 0.042 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_154 0.028 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_385 0.025 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_17 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_32 0.02 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_73 0.023 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0024 0.021 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0051 0.024 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_8 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_32 0.05 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_102 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_114 0.025 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_181 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_326 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_28 0.024 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_107 0.022 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_117 0.022 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_46 0.023 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_66 0.03 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_75 0.035 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_87 0.024 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_164 0.024 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_45 0.053 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_75 0.035 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_122 0.025 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_11 0.023 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_74 0.02 Orthogroups_2024-Update Compare
Sequences (218) (download table)



InterPro Domains



GO Terms



Family Terms