Coexpression cluster: Cluster_32 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 7.14% (11/154) 3.54 0.0 1e-06
GO:0003676 nucleic acid binding 11.04% (17/154) 1.94 2e-06 0.000382
GO:0097159 organic cyclic compound binding 16.88% (26/154) 1.29 2.1e-05 0.001081
GO:1901363 heterocyclic compound binding 16.88% (26/154) 1.29 2.1e-05 0.001081
GO:0003674 molecular_function 36.36% (56/154) 0.75 1.9e-05 0.00151
GO:0008152 metabolic process 19.48% (30/154) 1.13 3.5e-05 0.001561
GO:0003824 catalytic activity 22.73% (35/154) 1.07 1.5e-05 0.001597
GO:0006807 nitrogen compound metabolic process 15.58% (24/154) 1.29 4.4e-05 0.00172
GO:0044237 cellular metabolic process 14.94% (23/154) 1.25 9.9e-05 0.003451
GO:0140098 catalytic activity, acting on RNA 3.9% (6/154) 2.81 0.000224 0.007043
GO:0071704 organic substance metabolic process 15.58% (24/154) 1.11 0.000294 0.00843
GO:0009064 glutamine family amino acid metabolic process 1.3% (2/154) 6.0 0.000381 0.008582
GO:1901657 glycosyl compound metabolic process 1.95% (3/154) 4.27 0.000494 0.008648
GO:0009116 nucleoside metabolic process 1.95% (3/154) 4.27 0.000494 0.008648
GO:0008168 methyltransferase activity 3.25% (5/154) 3.03 0.000376 0.009109
GO:0016740 transferase activity 9.74% (15/154) 1.44 0.00045 0.00945
GO:0008150 biological_process 24.03% (37/154) 0.81 0.000363 0.009523
GO:0016741 transferase activity, transferring one-carbon groups 3.25% (5/154) 2.95 0.000494 0.009727
GO:0009987 cellular process 16.88% (26/154) 0.98 0.000634 0.010506
GO:0120013 intermembrane lipid transfer activity 1.3% (2/154) 5.52 0.000794 0.01088
GO:0120009 intermembrane lipid transfer 1.3% (2/154) 5.52 0.000794 0.01088
GO:0061024 membrane organization 1.3% (2/154) 5.52 0.000794 0.01088
GO:0006396 RNA processing 3.25% (5/154) 2.81 0.00075 0.011818
GO:0016070 RNA metabolic process 4.55% (7/154) 2.17 0.001006 0.012191
GO:0034641 cellular nitrogen compound metabolic process 9.09% (14/154) 1.39 0.000943 0.012383
GO:0044238 primary metabolic process 14.29% (22/154) 1.04 0.000988 0.012453
GO:0008135 translation factor activity, RNA binding 1.95% (3/154) 3.87 0.00113 0.013185
GO:0005319 lipid transporter activity 1.3% (2/154) 5.0 0.001682 0.017657
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.3% (2/154) 5.0 0.001682 0.017657
GO:0006139 nucleobase-containing compound metabolic process 7.79% (12/154) 1.45 0.001616 0.018178
GO:0006869 lipid transport 1.3% (2/154) 4.87 0.002047 0.020799
GO:0044281 small molecule metabolic process 5.19% (8/154) 1.81 0.00212 0.020872
GO:0005488 binding 22.08% (34/154) 0.69 0.003055 0.024673
GO:1901360 organic cyclic compound metabolic process 7.79% (12/154) 1.33 0.003185 0.025083
GO:0044271 cellular nitrogen compound biosynthetic process 5.19% (8/154) 1.73 0.003035 0.025157
GO:0008173 RNA methyltransferase activity 1.3% (2/154) 4.63 0.002879 0.025193
GO:1901135 carbohydrate derivative metabolic process 2.6% (4/154) 2.76 0.00298 0.025368
GO:0016831 carboxy-lyase activity 1.3% (2/154) 4.52 0.003345 0.025702
GO:1901566 organonitrogen compound biosynthetic process 3.9% (6/154) 2.1 0.002869 0.025822
GO:0046483 heterocycle metabolic process 7.79% (12/154) 1.36 0.002716 0.025927
GO:0006725 cellular aromatic compound metabolic process 7.79% (12/154) 1.35 0.002835 0.026269
GO:1901564 organonitrogen compound metabolic process 9.09% (14/154) 1.18 0.003706 0.027796
GO:0005737 cytoplasm 1.95% (3/154) 3.21 0.004199 0.030761
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines 0.65% (1/154) 7.33 0.006234 0.031172
GO:0016657 oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor 0.65% (1/154) 7.33 0.006234 0.031172
GO:0004359 glutaminase activity 0.65% (1/154) 7.33 0.006234 0.031172
GO:0006541 glutamine metabolic process 0.65% (1/154) 7.33 0.006234 0.031172
GO:0009446 putrescine biosynthetic process 0.65% (1/154) 7.33 0.006234 0.031172
GO:0004668 protein-arginine deiminase activity 0.65% (1/154) 7.33 0.006234 0.031172
GO:0033739 preQ1 synthase activity 0.65% (1/154) 7.33 0.006234 0.031172
GO:0006101 citrate metabolic process 0.65% (1/154) 7.33 0.006234 0.031172
GO:0009445 putrescine metabolic process 0.65% (1/154) 7.33 0.006234 0.031172
GO:0008964 phosphoenolpyruvate carboxylase activity 0.65% (1/154) 7.33 0.006234 0.031172
GO:0019856 pyrimidine nucleobase biosynthetic process 0.65% (1/154) 7.33 0.006234 0.031172
GO:0072350 tricarboxylic acid metabolic process 0.65% (1/154) 7.33 0.006234 0.031172
GO:0015977 carbon fixation 0.65% (1/154) 7.33 0.006234 0.031172
GO:0016999 antibiotic metabolic process 0.65% (1/154) 7.33 0.006234 0.031172
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 0.65% (1/154) 7.33 0.006234 0.031172
GO:0004055 argininosuccinate synthase activity 0.65% (1/154) 7.33 0.006234 0.031172
GO:0006206 pyrimidine nucleobase metabolic process 0.65% (1/154) 7.33 0.006234 0.031172
GO:0004590 orotidine-5'-phosphate decarboxylase activity 0.65% (1/154) 7.33 0.006234 0.031172
GO:0006099 tricarboxylic acid cycle 0.65% (1/154) 7.33 0.006234 0.031172
GO:0043168 anion binding 9.09% (14/154) 1.08 0.006628 0.03212
GO:0044249 cellular biosynthetic process 5.84% (9/154) 1.43 0.006601 0.032487
GO:0008144 drug binding 7.79% (12/154) 1.17 0.007297 0.034827
GO:1901576 organic substance biosynthetic process 5.84% (9/154) 1.4 0.007579 0.035635
GO:0016211 ammonia ligase activity 0.65% (1/154) 6.33 0.01243 0.043994
GO:0004356 glutamate-ammonia ligase activity 0.65% (1/154) 6.33 0.01243 0.043994
GO:0004594 pantothenate kinase activity 0.65% (1/154) 6.33 0.01243 0.043994
GO:0009112 nucleobase metabolic process 0.65% (1/154) 6.33 0.01243 0.043994
GO:0005666 RNA polymerase III complex 0.65% (1/154) 6.33 0.01243 0.043994
GO:0006526 arginine biosynthetic process 0.65% (1/154) 6.33 0.01243 0.043994
GO:0046112 nucleobase biosynthetic process 0.65% (1/154) 6.33 0.01243 0.043994
GO:0097164 ammonium ion metabolic process 0.65% (1/154) 6.33 0.01243 0.043994
GO:0006383 transcription by RNA polymerase III 0.65% (1/154) 6.33 0.01243 0.043994
GO:0009309 amine biosynthetic process 0.65% (1/154) 6.33 0.01243 0.043994
GO:0006525 arginine metabolic process 0.65% (1/154) 6.33 0.01243 0.043994
GO:0000428 DNA-directed RNA polymerase complex 0.65% (1/154) 6.33 0.01243 0.043994
GO:0042401 cellular biogenic amine biosynthetic process 0.65% (1/154) 6.33 0.01243 0.043994
GO:0016880 acid-ammonia (or amide) ligase activity 0.65% (1/154) 6.33 0.01243 0.043994
GO:0006595 polyamine metabolic process 0.65% (1/154) 6.33 0.01243 0.043994
GO:0006596 polyamine biosynthetic process 0.65% (1/154) 6.33 0.01243 0.043994
GO:0055029 nuclear DNA-directed RNA polymerase complex 0.65% (1/154) 6.33 0.01243 0.043994
GO:1901362 organic cyclic compound biosynthetic process 3.9% (6/154) 1.65 0.01257 0.043995
GO:0016830 carbon-carbon lyase activity 1.3% (2/154) 4.08 0.006159 0.044095
GO:0036094 small molecule binding 9.09% (14/154) 1.02 0.009654 0.04472
GO:0005524 ATP binding 7.14% (11/154) 1.11 0.013368 0.046275
GO:0030554 adenyl nucleotide binding 7.14% (11/154) 1.1 0.014282 0.047356
GO:0032559 adenyl ribonucleotide binding 7.14% (11/154) 1.1 0.014049 0.047586
GO:0016779 nucleotidyltransferase activity 1.95% (3/154) 2.57 0.014223 0.047662
GO:0018130 heterocycle biosynthetic process 3.9% (6/154) 1.71 0.010643 0.047895
GO:0055086 nucleobase-containing small molecule metabolic process 3.25% (5/154) 1.93 0.010516 0.048009
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.3% (2/154) 3.47 0.014041 0.048075
GO:0034062 5'-3' RNA polymerase activity 1.3% (2/154) 3.42 0.014983 0.048159
GO:0097747 RNA polymerase activity 1.3% (2/154) 3.42 0.014983 0.048159
GO:0004386 helicase activity 1.3% (2/154) 3.42 0.014983 0.048159
GO:0035639 purine ribonucleoside triphosphate binding 7.79% (12/154) 1.02 0.015581 0.049577
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum pennellii HCCA clusters Cluster_122 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_187 0.02 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_3 0.02 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_26 0.026 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_114 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_24 0.02 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_45 0.025 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_18 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_59 0.023 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_216 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_289 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_426 0.023 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_47 0.02 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_113 0.024 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_248 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_392 0.021 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_28 0.022 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_1 0.024 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_33 0.028 Orthogroups_2024-Update Compare
Sequences (154) (download table)

InterPro Domains

GO Terms

Family Terms