Coexpression cluster: Cluster_3 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006520 cellular amino acid metabolic process 6.22% (13/209) 3.72 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 4.78% (10/209) 3.82 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 6.22% (13/209) 3.23 0.0 0.0
GO:0043038 amino acid activation 3.83% (8/209) 4.16 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.83% (8/209) 4.16 0.0 0.0
GO:0043039 tRNA aminoacylation 3.83% (8/209) 4.16 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 3.83% (8/209) 4.16 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 3.83% (8/209) 4.32 0.0 0.0
GO:0006082 organic acid metabolic process 6.22% (13/209) 3.01 0.0 0.0
GO:0043436 oxoacid metabolic process 6.22% (13/209) 3.01 0.0 0.0
GO:0019752 carboxylic acid metabolic process 6.22% (13/209) 3.03 0.0 1e-06
GO:0006399 tRNA metabolic process 4.31% (9/209) 3.49 0.0 3e-06
GO:0009073 aromatic amino acid family biosynthetic process 2.39% (5/209) 5.27 0.0 3e-06
GO:0009072 aromatic amino acid family metabolic process 2.39% (5/209) 4.82 1e-06 1.6e-05
GO:0034660 ncRNA metabolic process 4.31% (9/209) 3.09 1e-06 2.9e-05
GO:0016070 RNA metabolic process 6.22% (13/209) 2.24 4e-06 0.000101
GO:0016874 ligase activity 3.83% (8/209) 3.09 5e-06 0.000102
GO:0006725 cellular aromatic compound metabolic process 10.05% (21/209) 1.55 1.1e-05 0.000228
GO:1901607 alpha-amino acid biosynthetic process 2.39% (5/209) 4.03 1.2e-05 0.000233
GO:0005488 binding 28.23% (59/209) 0.77 1.3e-05 0.000254
GO:0044281 small molecule metabolic process 7.18% (15/209) 1.88 1.6e-05 0.000273
GO:1901360 organic cyclic compound metabolic process 10.05% (21/209) 1.52 1.6e-05 0.000282
GO:0006547 histidine metabolic process 1.44% (3/209) 5.41 3.1e-05 0.000442
GO:0000105 histidine biosynthetic process 1.44% (3/209) 5.41 3.1e-05 0.000442
GO:0052803 imidazole-containing compound metabolic process 1.44% (3/209) 5.41 3.1e-05 0.000442
GO:0008652 cellular amino acid biosynthetic process 2.39% (5/209) 3.73 3.4e-05 0.000456
GO:0003723 RNA binding 4.78% (10/209) 2.35 2.9e-05 0.000466
GO:1901605 alpha-amino acid metabolic process 2.39% (5/209) 3.78 2.9e-05 0.000473
GO:0097159 organic cyclic compound binding 19.14% (40/209) 0.93 4.8e-05 0.000605
GO:1901363 heterocyclic compound binding 19.14% (40/209) 0.93 4.8e-05 0.000605
GO:0090304 nucleic acid metabolic process 6.7% (14/209) 1.77 6.8e-05 0.000839
GO:0043167 ion binding 16.75% (35/209) 0.98 7.3e-05 0.000862
GO:0046483 heterocycle metabolic process 9.09% (19/209) 1.4 0.000112 0.001292
GO:0000049 tRNA binding 1.44% (3/209) 4.82 0.000129 0.001436
GO:0036094 small molecule binding 13.88% (29/209) 1.06 0.000134 0.001453
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 0.96% (2/209) 6.41 0.000138 0.001458
GO:0043168 anion binding 13.4% (28/209) 1.07 0.000156 0.001604
GO:0008144 drug binding 11.48% (24/209) 1.1 0.000361 0.003609
GO:0034641 cellular nitrogen compound metabolic process 9.57% (20/209) 1.2 0.000462 0.004504
GO:0070279 vitamin B6 binding 1.91% (4/209) 3.36 0.000586 0.005431
GO:0030170 pyridoxal phosphate binding 1.91% (4/209) 3.36 0.000586 0.005431
GO:0003674 molecular_function 38.28% (80/209) 0.45 0.000723 0.00654
GO:0016779 nucleotidyltransferase activity 2.39% (5/209) 2.75 0.000873 0.007215
GO:0046394 carboxylic acid biosynthetic process 2.39% (5/209) 2.75 0.000873 0.007215
GO:0016053 organic acid biosynthetic process 2.39% (5/209) 2.75 0.000873 0.007215
GO:0017111 nucleoside-triphosphatase activity 4.78% (10/209) 1.75 0.000836 0.007385
GO:0006139 nucleobase-containing compound metabolic process 7.66% (16/209) 1.28 0.00099 0.008007
GO:0016462 pyrophosphatase activity 4.78% (10/209) 1.7 0.00109 0.008633
GO:0003676 nucleic acid binding 8.61% (18/209) 1.17 0.001142 0.008855
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.78% (10/209) 1.68 0.001188 0.009032
GO:0016817 hydrolase activity, acting on acid anhydrides 4.78% (10/209) 1.67 0.001258 0.00937
GO:0019842 vitamin binding 1.91% (4/209) 3.02 0.001476 0.010785
GO:1901265 nucleoside phosphate binding 11.96% (25/209) 0.91 0.001721 0.01211
GO:0000166 nucleotide binding 11.96% (25/209) 0.91 0.001721 0.01211
GO:0016887 ATPase activity 2.87% (6/209) 2.24 0.001758 0.012144
GO:0003824 catalytic activity 23.44% (49/209) 0.57 0.002327 0.015789
GO:0032553 ribonucleotide binding 11.0% (23/209) 0.92 0.002397 0.015981
GO:0048037 cofactor binding 4.78% (10/209) 1.53 0.002621 0.016884
GO:0097367 carbohydrate derivative binding 11.0% (23/209) 0.91 0.00261 0.017101
GO:0009058 biosynthetic process 7.18% (15/209) 1.15 0.00328 0.020436
GO:0050662 coenzyme binding 3.35% (7/209) 1.87 0.003228 0.020447
GO:1902600 proton transmembrane transport 1.44% (3/209) 3.29 0.003432 0.021033
GO:0035639 purine ribonucleoside triphosphate binding 10.53% (22/209) 0.89 0.004096 0.024703
GO:0032555 purine ribonucleotide binding 10.53% (22/209) 0.88 0.00429 0.025471
GO:0017076 purine nucleotide binding 10.53% (22/209) 0.88 0.004441 0.025961
GO:0005524 ATP binding 9.57% (20/209) 0.91 0.004943 0.028457
GO:0044283 small molecule biosynthetic process 2.39% (5/209) 2.17 0.005088 0.028857
GO:0008152 metabolic process 20.57% (43/209) 0.56 0.005243 0.028877
GO:0032559 adenyl ribonucleotide binding 9.57% (20/209) 0.91 0.005187 0.028984
GO:0030554 adenyl nucleotide binding 9.57% (20/209) 0.9 0.005376 0.029184
GO:0042626 ATPase activity, coupled to transmembrane movement of substances 1.44% (3/209) 3.04 0.005682 0.02999
GO:0043492 ATPase activity, coupled to movement of substances 1.44% (3/209) 3.04 0.005682 0.02999
GO:0015399 primary active transmembrane transporter activity 1.44% (3/209) 2.99 0.006216 0.031922
GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity 1.44% (3/209) 2.99 0.006216 0.031922
GO:0090662 ATP hydrolysis coupled transmembrane transport 0.96% (2/209) 3.95 0.007084 0.034075
GO:0015991 ATP hydrolysis coupled proton transport 0.96% (2/209) 3.95 0.007084 0.034075
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient 0.96% (2/209) 3.95 0.007084 0.034075
GO:0099131 ATP hydrolysis coupled ion transmembrane transport 0.96% (2/209) 3.95 0.007084 0.034075
GO:0099132 ATP hydrolysis coupled cation transmembrane transport 0.96% (2/209) 3.95 0.007084 0.034075
GO:0098655 cation transmembrane transport 1.44% (3/209) 2.78 0.009329 0.04323
GO:0098660 inorganic ion transmembrane transport 1.44% (3/209) 2.78 0.009329 0.04323
GO:0098662 inorganic cation transmembrane transport 1.44% (3/209) 2.78 0.009329 0.04323
GO:0042255 ribosome assembly 0.48% (1/209) 6.41 0.011781 0.046154
GO:0009094 L-phenylalanine biosynthetic process 0.48% (1/209) 6.41 0.011781 0.046154
GO:0004664 prephenate dehydratase activity 0.48% (1/209) 6.41 0.011781 0.046154
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 0.48% (1/209) 6.41 0.011781 0.046154
GO:0008987 quinolinate synthetase A activity 0.48% (1/209) 6.41 0.011781 0.046154
GO:0042256 mature ribosome assembly 0.48% (1/209) 6.41 0.011781 0.046154
GO:0004399 histidinol dehydrogenase activity 0.48% (1/209) 6.41 0.011781 0.046154
GO:0006438 valyl-tRNA aminoacylation 0.48% (1/209) 6.41 0.011781 0.046154
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 0.48% (1/209) 6.41 0.011781 0.046154
GO:0004832 valine-tRNA ligase activity 0.48% (1/209) 6.41 0.011781 0.046154
GO:0008977 prephenate dehydrogenase (NAD+) activity 0.48% (1/209) 6.41 0.011781 0.046154
GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process 0.48% (1/209) 6.41 0.011781 0.046154
GO:0006571 tyrosine biosynthetic process 0.48% (1/209) 6.41 0.011781 0.046154
GO:0004665 prephenate dehydrogenase (NADP+) activity 0.48% (1/209) 6.41 0.011781 0.046154
GO:0034220 ion transmembrane transport 1.44% (3/209) 2.63 0.012367 0.047953
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_12 0.024 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_28 0.02 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_34 0.024 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_11 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_67 0.029 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_71 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_96 0.031 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_110 0.022 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_189 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_238 0.021 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_21 0.023 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_56 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_108 0.023 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_114 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_127 0.027 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_10 0.024 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_64 0.035 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_83 0.023 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_93 0.022 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_209 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_18 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_27 0.022 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_44 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_95 0.023 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_104 0.027 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_136 0.032 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_137 0.024 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_249 0.023 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_3 0.021 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_18 0.02 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_25 0.02 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_88 0.02 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_5 0.025 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_171 0.02 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_185 0.025 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_71 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_241 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_88 0.029 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_260 0.026 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_275 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_320 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_441 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_453 0.022 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_39 0.02 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_82 0.023 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_161 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_23 0.026 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_32 0.02 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_47 0.025 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_77 0.022 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_78 0.022 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_79 0.032 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_117 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_180 0.025 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_6 0.027 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0012 0.02 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0054 0.023 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0106 0.021 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0030 0.02 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0036 0.023 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0105 0.025 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_8 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_23 0.019 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_30 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_83 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_128 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_168 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_212 0.026 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_28 0.027 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_83 0.023 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_91 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_204 0.025 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_28 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_46 0.02 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_92 0.026 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_120 0.024 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_163 0.023 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_2 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_3 0.024 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_83 0.023 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_144 0.02 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_9 0.02 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_13 0.022 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_76 0.023 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_97 0.029 Orthogroups_2024-Update Compare
Sequences (209) (download table)

InterPro Domains

GO Terms

Family Terms