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  5. evm.model.tig00000852.39

evm.model.tig00000852.39


Description : (at4g07410 : 188.0) Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G27470.1); Has 10654 Blast hits to 6476 proteins in 452 species: Archae - 14; Bacteria - 3757; Metazoa - 2166; Fungi - 2748; Plants - 788; Viruses - 0; Other Eukaryotes - 1181 (source: NCBI BLink). & (reliability: 376.0) & (original description: no original description)


Gene families : OG_42_0004547 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000852.39
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Bradi1g09530 No alias Transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Brara.C02553.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.03 Orthogroups_2024-Update
Brara.H02048.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.07 Orthogroups_2024-Update
Brara.I03013.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.06 Orthogroups_2024-Update
Cre13.g606850 No alias Transducin family protein / WD-40 repeat family protein 0.11 Orthogroups_2024-Update
Glyma.14G089042 No alias Transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Glyma.17G233900 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G010910.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.01 Orthogroups_2024-Update
Kfl00551_0060 kfl00551_0060_v1.... (at4g07410 : 324.0) Transducin family protein / WD-40... 0.05 Orthogroups_2024-Update
MA_10435752g0010 No alias (at4g07410 : 434.0) Transducin family protein / WD-40... 0.02 Orthogroups_2024-Update
PSME_00007253-RA No alias (at4g07410 : 721.0) Transducin family protein / WD-40... 0.02 Orthogroups_2024-Update
Potri.002G117500 No alias Transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
Potri.014G014900 No alias Transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
Pp1s20_312V6 No alias F28D6.14; transducin family protein / WD-40 repeat... 0.02 Orthogroups_2024-Update
Pp1s71_289V6 No alias F28D6.14; transducin family protein / WD-40 repeat... 0.06 Orthogroups_2024-Update
Seita.9G102800.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.07 Orthogroups_2024-Update
Sobic.001G099900.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.08 Orthogroups_2024-Update
Solyc04g077680 No alias Transducin family protein / WD-40 repeat family protein... 0.05 Orthogroups_2024-Update
Solyc12g088290 No alias Transducin/WD-like repeat-protein (AHRD V3.3 *** G7LGL1_MEDTR) 0.01 Orthogroups_2024-Update
Sopen04g031320 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
Sopen12g030290 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0000959 mitochondrial RNA metabolic process IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 164 188
IPR001680 WD40_repeat 18 50
IPR001680 WD40_repeat 118 143
No external refs found!