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  5. evm.model.tig00000863.16

evm.model.tig00000863.16


Description : (at5g41790 : 116.0) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9m7j4|mfp1_tobac : 90.5) MAR-binding filament-like protein 1-1 - Nicotiana tabacum (Common tobacco) & (reliability: 232.0) & (original description: no original description)


Gene families : OG_42_0014791 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0014791_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000863.16
Cluster HCCA clusters: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Cre17.g698365 No alias Function unknown 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0003352 regulation of cilium movement IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005929 cilium IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
CC GO:0031514 motile cilium IEP Predicted GO
BP GO:0032879 regulation of localization IEP Predicted GO
BP GO:0032886 regulation of microtubule-based process IEP Predicted GO
BP GO:0040011 locomotion IEP Predicted GO
CC GO:0042995 cell projection IEP Predicted GO
BP GO:0048870 cell motility IEP Predicted GO
BP GO:0051270 regulation of cellular component movement IEP Predicted GO
BP GO:0060632 regulation of microtubule-based movement IEP Predicted GO
CC GO:0120025 plasma membrane bounded cell projection IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!