evm.model.tig00000865.27

Description : (at1g20960 : 291.0) embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1). & (reliability: 582.0) & (original description: no original description)

Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00000865.27
Cluster	HCCA clusters: Cluster_61

Target	Alias	Description	ECC score	Gene Family Method
144158	No alias	U5 small nuclear ribonucleoprotein helicase, putative	0.02	Orthogroups_2024-Update
410613	No alias	U5 small nuclear ribonucleoprotein helicase	0.01	Orthogroups_2024-Update
A4A49_03610	No alias	dexh-box atp-dependent rna helicase dexh14	0.02	Orthogroups_2024-Update
A4A49_16477	No alias	dexh-box atp-dependent rna helicase dexh12	0.01	Orthogroups_2024-Update
At1g20960	No alias	DExH-box ATP-dependent RNA helicase DExH12...	0.02	Orthogroups_2024-Update
At2g42270	No alias	DExH-box ATP-dependent RNA helicase DExH13...	0.01	Orthogroups_2024-Update
Bradi1g70057	No alias	U5 small nuclear ribonucleoprotein helicase	0.03	Orthogroups_2024-Update
Bradi3g00980	No alias	U5 small nuclear ribonucleoprotein helicase, putative	0.04	Orthogroups_2024-Update
Brara.H01126.1	No alias	RNA helicase *(Brr2)	0.02	Orthogroups_2024-Update
Cre17.g744147	No alias	U5 small nuclear ribonucleoprotein helicase, putative	0.02	Orthogroups_2024-Update
Glyma.06G202500	No alias	U5 small nuclear ribonucleoprotein helicase	0.04	Orthogroups_2024-Update
Glyma.08G173500	No alias	U5 small nuclear ribonucleoprotein helicase, putative	0.03	Orthogroups_2024-Update
Glyma.15G253800	No alias	U5 small nuclear ribonucleoprotein helicase, putative	0.02	Orthogroups_2024-Update
Kfl00102_0100	kfl00102_0100_v1.1	(at1g20960 : 2806.0) embryo defective 1507 (emb1507);...	0.04	Orthogroups_2024-Update
LOC_Os03g11470	No alias	DEAD/DEAH box helicase domain containing protein, expressed	0.01	Orthogroups_2024-Update
MA_81219g0030	No alias	(at1g20960 : 1029.0) embryo defective 1507 (emb1507);...	0.01	Orthogroups_2024-Update
PSME_00000757-RA	No alias	(at5g61140 : 756.0) Encodes a predicted protein with 30%...	0.02	Orthogroups_2024-Update
PSME_00051380-RA	No alias	(at1g20960 : 1382.0) embryo defective 1507 (emb1507);...	0.01	Orthogroups_2024-Update
Pp1s84_129V6	No alias	novel rna helicase familyprotein	0.02	Orthogroups_2024-Update
Seita.1G005500.1	No alias	RNA helicase *(Brr2)	0.04	Orthogroups_2024-Update
Sobic.001G457800.2	No alias	RNA helicase *(Brr2)	0.02	Orthogroups_2024-Update
Sopen02g031330	No alias	Sec63 Brl domain	0.02	Orthogroups_2024-Update
Sopen06g033490	No alias	Sec63 Brl domain	0.02	Orthogroups_2024-Update
evm.model.contig_4401.1	No alias	(at3g27730 : 193.0) DNA helicase required for...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0003682	chromatin binding	IEP	Predicted GO
MF	GO:0003777	microtubule motor activity	IEP	Predicted GO
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005198	structural molecule activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
BP	GO:0006928	movement of cell or subcellular component	IEP	Predicted GO
BP	GO:0007018	microtubule-based movement	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
BP	GO:0009966	regulation of signal transduction	IEP	Predicted GO
BP	GO:0010646	regulation of cell communication	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016071	mRNA metabolic process	IEP	Predicted GO
BP	GO:0016192	vesicle-mediated transport	IEP	Predicted GO
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predicted GO
MF	GO:0017069	snRNA binding	IEP	Predicted GO
MF	GO:0017070	U6 snRNA binding	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
BP	GO:0023051	regulation of signaling	IEP	Predicted GO
CC	GO:0030117	membrane coat	IEP	Predicted GO
CC	GO:0030120	vesicle coat	IEP	Predicted GO
CC	GO:0030126	COPI vesicle coat	IEP	Predicted GO
MF	GO:0030623	U5 snRNA binding	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
CC	GO:0044425	membrane part	IEP	Predicted GO
CC	GO:0044431	Golgi apparatus part	IEP	Predicted GO
CC	GO:0044433	cytoplasmic vesicle part	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
BP	GO:0048583	regulation of response to stimulus	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
MF	GO:0098772	molecular function regulator	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	423	483

External Links

No external refs found!

evm.model.tig00000865.27

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation