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- evm.model.tig00000865.51
evm.model.tig00000865.51
Description : (at4g04350 : 1048.0) EMBRYO DEFECTIVE 2369 (EMB2369); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (InterPro:IPR002302), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.1); Has 40727 Blast hits to 36917 proteins in 3154 species: Archae - 1372; Bacteria - 23600; Metazoa - 846; Fungi - 790; Plants - 334; Viruses - 3; Other Eukaryotes - 13782 (source: NCBI BLink). & (reliability: 2096.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Cyanophora release: evm.model.tig00000865.51 | |
Cluster | HCCA clusters: Cluster_23 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
At4g04350 | No alias | Leucine--tRNA ligase, chloroplastic/mitochondrial... | 0.01 | Orthogroups_2024-Update | |
Bradi2g01504 | No alias | tRNA synthetase class I (I, L, M and V) family protein | 0.07 | Orthogroups_2024-Update | |
Brara.C02722.1 | No alias | leucine-tRNA ligase | 0.03 | Orthogroups_2024-Update | |
Cre13.g578451 | No alias | tRNA synthetase class I (I, L, M and V) family protein | 0.07 | Orthogroups_2024-Update | |
Glyma.07G263100 | No alias | tRNA synthetase class I (I, L, M and V) family protein | 0.03 | Orthogroups_2024-Update | |
Kfl00360_0090 | kfl00360_0090_v1.1 | (at4g04350 : 1214.0) EMBRYO DEFECTIVE 2369 (EMB2369);... | 0.03 | Orthogroups_2024-Update | |
LOC_Os01g03020 | No alias | tRNA synthetase class I, putative, expressed | 0.02 | Orthogroups_2024-Update | |
Mp3g22600.1 | No alias | leucine-tRNA ligase | 0.01 | Orthogroups_2024-Update | |
Pp1s75_41V6 | No alias | leucyl-trna synthetase | 0.02 | Orthogroups_2024-Update | |
Seita.5G081200.1 | No alias | leucine-tRNA ligase | 0.03 | Orthogroups_2024-Update | |
Sobic.003G094350.1 | No alias | leucine-tRNA ligase | 0.02 | Orthogroups_2024-Update | |
Sopen02g025670 | No alias | Leucyl-tRNA synthetase, Domain 2 | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_2044.7 | No alias | (at4g04350 : 993.0) EMBRYO DEFECTIVE 2369 (EMB2369);... | 0.04 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0000166 | nucleotide binding | IEA | InterProScan predictions |
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEA | InterProScan predictions |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEA | InterProScan predictions |
MF | GO:0005488 | binding | None | Extended |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
BP | GO:0006082 | organic acid metabolic process | None | Extended |
BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
BP | GO:0006399 | tRNA metabolic process | None | Extended |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEA | InterProScan predictions |
BP | GO:0006520 | cellular amino acid metabolic process | None | Extended |
BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
MF | GO:0008144 | drug binding | None | Extended |
BP | GO:0008150 | biological_process | None | Extended |
BP | GO:0008152 | metabolic process | None | Extended |
BP | GO:0009987 | cellular process | None | Extended |
BP | GO:0016070 | RNA metabolic process | None | Extended |
MF | GO:0016787 | hydrolase activity | None | Extended |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | None | Extended |
MF | GO:0016874 | ligase activity | None | Extended |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | None | Extended |
MF | GO:0017076 | purine nucleotide binding | None | Extended |
BP | GO:0019752 | carboxylic acid metabolic process | None | Extended |
MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
MF | GO:0032553 | ribonucleotide binding | None | Extended |
MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
BP | GO:0034660 | ncRNA metabolic process | None | Extended |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
MF | GO:0036094 | small molecule binding | None | Extended |
BP | GO:0043038 | amino acid activation | None | Extended |
BP | GO:0043039 | tRNA aminoacylation | None | Extended |
MF | GO:0043167 | ion binding | None | Extended |
MF | GO:0043168 | anion binding | None | Extended |
BP | GO:0043170 | macromolecule metabolic process | None | Extended |
BP | GO:0043436 | oxoacid metabolic process | None | Extended |
BP | GO:0044237 | cellular metabolic process | None | Extended |
BP | GO:0044238 | primary metabolic process | None | Extended |
BP | GO:0044281 | small molecule metabolic process | None | Extended |
BP | GO:0046483 | heterocycle metabolic process | None | Extended |
MF | GO:0052689 | carboxylic ester hydrolase activity | None | Extended |
BP | GO:0071704 | organic substance metabolic process | None | Extended |
BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
MF | GO:0140098 | catalytic activity, acting on RNA | None | Extended |
MF | GO:0140101 | catalytic activity, acting on a tRNA | None | Extended |
MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
BP | GO:1901564 | organonitrogen compound metabolic process | None | Extended |
Type | GO Term | Name | Evidence | Source |
MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0004427 | inorganic diphosphatase activity | IEP | Predicted GO |
MF | GO:0004601 | peroxidase activity | IEP | Predicted GO |
MF | GO:0004602 | glutathione peroxidase activity | IEP | Predicted GO |
MF | GO:0004655 | porphobilinogen synthase activity | IEP | Predicted GO |
MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0004832 | valine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
BP | GO:0006423 | cysteinyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006457 | protein folding | IEP | Predicted GO |
BP | GO:0006694 | steroid biosynthetic process | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0006979 | response to oxidative stress | IEP | Predicted GO |
BP | GO:0008202 | steroid metabolic process | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | Predicted GO |
MF | GO:0016831 | carboxy-lyase activity | IEP | Predicted GO |
BP | GO:0017038 | protein import | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
MF | GO:0042802 | identical protein binding | IEP | Predicted GO |
MF | GO:0042803 | protein homodimerization activity | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Predicted GO |
MF | GO:0060590 | ATPase regulator activity | IEP | Predicted GO |
MF | GO:0070567 | cytidylyltransferase activity | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
IPR013155 | M/V/L/I-tRNA-synth_anticd-bd | 754 | 866 |
IPR025709 | Leu_tRNA-synth_edit | 300 | 477 |
IPR015413 | Methionyl/Leucyl_tRNA_Synth | 119 | 251 |
IPR002300 | aa-tRNA-synth_Ia | 668 | 703 |