evm.model.tig00000865.51


Description : (at4g04350 : 1048.0) EMBRYO DEFECTIVE 2369 (EMB2369); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (InterPro:IPR002302), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.1); Has 40727 Blast hits to 36917 proteins in 3154 species: Archae - 1372; Bacteria - 23600; Metazoa - 846; Fungi - 790; Plants - 334; Viruses - 3; Other Eukaryotes - 13782 (source: NCBI BLink). & (reliability: 2096.0) & (original description: no original description)


Gene families : OG_42_0006793 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006793_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000865.51
Cluster HCCA clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
At4g04350 No alias Leucine--tRNA ligase, chloroplastic/mitochondrial... 0.01 Orthogroups_2024-Update
Bradi2g01504 No alias tRNA synthetase class I (I, L, M and V) family protein 0.07 Orthogroups_2024-Update
Brara.C02722.1 No alias leucine-tRNA ligase 0.03 Orthogroups_2024-Update
Cre13.g578451 No alias tRNA synthetase class I (I, L, M and V) family protein 0.07 Orthogroups_2024-Update
Glyma.07G263100 No alias tRNA synthetase class I (I, L, M and V) family protein 0.03 Orthogroups_2024-Update
Kfl00360_0090 kfl00360_0090_v1.1 (at4g04350 : 1214.0) EMBRYO DEFECTIVE 2369 (EMB2369);... 0.03 Orthogroups_2024-Update
LOC_Os01g03020 No alias tRNA synthetase class I, putative, expressed 0.02 Orthogroups_2024-Update
Mp3g22600.1 No alias leucine-tRNA ligase 0.01 Orthogroups_2024-Update
Pp1s75_41V6 No alias leucyl-trna synthetase 0.02 Orthogroups_2024-Update
Seita.5G081200.1 No alias leucine-tRNA ligase 0.03 Orthogroups_2024-Update
Sobic.003G094350.1 No alias leucine-tRNA ligase 0.02 Orthogroups_2024-Update
Sopen02g025670 No alias Leucyl-tRNA synthetase, Domain 2 0.02 Orthogroups_2024-Update
evm.model.contig_2044.7 No alias (at4g04350 : 993.0) EMBRYO DEFECTIVE 2369 (EMB2369);... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA InterProScan predictions
MF GO:0002161 aminoacyl-tRNA editing activity IEA InterProScan predictions
MF GO:0004812 aminoacyl-tRNA ligase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006418 tRNA aminoacylation for protein translation IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0004655 porphobilinogen synthase activity IEP Predicted GO
MF GO:0004817 cysteine-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0070567 cytidylyltransferase activity IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 754 866
IPR025709 Leu_tRNA-synth_edit 300 477
IPR015413 Methionyl/Leucyl_tRNA_Synth 119 251
IPR002300 aa-tRNA-synth_Ia 668 703
No external refs found!