Description : (p55004|phye_iponi : 115.0) Phytochrome E - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (at4g16250 : 112.0) Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses. It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo.; phytochrome D (PHYD); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 26426 Blast hits to 26152 proteins in 3833 species: Archae - 221; Bacteria - 20797; Metazoa - 4; Fungi - 482; Plants - 3855; Viruses - 5; Other Eukaryotes - 1062 (source: NCBI BLink). & (reliability: 224.0) & (original description: no original description)
Gene families : OG_42_0056230 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Cyanophora release: evm.model.tig00000980.27 | |
Cluster | HCCA clusters: Cluster_147 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | InterProScan predictions |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
BP | GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | IEP | Predicted GO |
BP | GO:0009056 | catabolic process | IEP | Predicted GO |
BP | GO:0009057 | macromolecule catabolic process | IEP | Predicted GO |
BP | GO:0009108 | coenzyme biosynthetic process | IEP | Predicted GO |
CC | GO:0019008 | molybdopterin synthase complex | IEP | Predicted GO |
BP | GO:0019720 | Mo-molybdopterin cofactor metabolic process | IEP | Predicted GO |
BP | GO:0030163 | protein catabolic process | IEP | Predicted GO |
BP | GO:0043545 | molybdopterin cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
BP | GO:0051189 | prosthetic group metabolic process | IEP | Predicted GO |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Predicted GO |
MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Predicted GO |
MF | GO:0051540 | metal cluster binding | IEP | Predicted GO |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
BP | GO:1901575 | organic substance catabolic process | IEP | Predicted GO |
No external refs found! |