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  5. Solyc05g009380

Solyc05g009380


Description : lyrate


Gene families : OG_42_0000024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g009380
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
At2g42410 No alias zinc finger protein 11 [Source:TAIR;Acc:AT2G42410] 0.05 Orthogroups_2024-Update
At3g53820 No alias C2H2 and C2HC zinc fingers superfamily protein... 0.03 Orthogroups_2024-Update
LOC_Os04g36650 No alias ZOS4-06 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g50070 No alias ZOS4-13 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g36110 No alias ZOS8-06 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g26210 No alias ZOS9-12 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
Potri.003G192000 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G059000 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Pp1s2_490V6 No alias transcriptional regulator 0.02 Orthogroups_2024-Update
Sopen06g025650 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!