evm.model.tig00001049.16

Description : (at5g52470 : 336.0) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.; fibrillarin 1 (FIB1); FUNCTIONS IN: snoRNA binding; INVOLVED IN: RNA methylation, rRNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 2 (TAIR:AT4G25630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 672.0) & (original description: no original description)

Gene families : OG_42_0002666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002666_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00001049.16
Cluster	HCCA clusters: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method
A4A49_36833	No alias	mediator of rna polymerase ii transcription subunit 36a	0.03	Orthogroups_2024-Update
At4g25630	No alias	Mediator of RNA polymerase II transcription subunit 36a...	0.09	Orthogroups_2024-Update
At5g52470	No alias	Probable mediator of RNA polymerase II transcription...	0.03	Orthogroups_2024-Update
Bradi1g32010	No alias	fibrillarin 1	0.01	Orthogroups_2024-Update
Bradi3g55810	No alias	fibrillarin 2	0.03	Orthogroups_2024-Update
Brara.A01555.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.07	Orthogroups_2024-Update
Brara.H01568.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.09	Orthogroups_2024-Update
Cre02.g077300	No alias	fibrillarin 2	0.05	Orthogroups_2024-Update
Glyma.04G200700	No alias	fibrillarin 2	0.03	Orthogroups_2024-Update
Glyma.06G164800	No alias	fibrillarin 2	0.01	Orthogroups_2024-Update
Glyma.11G237200	No alias	fibrillarin 2	0.05	Orthogroups_2024-Update
Glyma.18G020000	No alias	fibrillarin 2	0.03	Orthogroups_2024-Update
HORVU6Hr1G091860.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.04	Orthogroups_2024-Update
HORVU7Hr1G108780.2	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.02	Orthogroups_2024-Update
Kfl00029_0080	kfl00029_0080_v1....	(at4g25630 : 404.0) encodes a fibrillarin, a key...	0.03	Orthogroups_2024-Update
LOC_Os05g08360	No alias	rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed	0.03	Orthogroups_2024-Update
MA_124463g0010	No alias	(at4g25630 : 414.0) encodes a fibrillarin, a key...	0.02	Orthogroups_2024-Update
Mp2g12880.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.01	Orthogroups_2024-Update
PSME_00017689-RA	No alias	(at4g25630 : 209.0) encodes a fibrillarin, a key...	0.01	Orthogroups_2024-Update
Potri.015G147500	No alias	fibrillarin 1	0.04	Orthogroups_2024-Update
Pp1s15_290V6	No alias	loc398434 protein	0.02	Orthogroups_2024-Update
Pp1s177_5V6	No alias	loc398434 protein	0.06	Orthogroups_2024-Update
Pp1s54_67V6	No alias	L73G19.10; fibrillarin 2 (FIB2) [Arabidopsis thaliana]	0.03	Orthogroups_2024-Update
Seita.1G370900.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.12	Orthogroups_2024-Update
Sobic.004G349700.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.07	Orthogroups_2024-Update
Solyc03g025270	No alias	fibrillarin 2 (AHRD V3.3 *** AT4G25630.1)	0.09	Orthogroups_2024-Update
Sopen03g004100	No alias	Fibrillarin	0.1	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
CC	GO:0034457	Mpp10 complex	IEP	Predicted GO
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044452	nucleolar part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	66	262

External Links

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evm.model.tig00001049.16

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation