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  5. evm.model.tig00001073.20

evm.model.tig00001073.20


Description : (at1g56110 : 570.0) NOP56-like protein; homolog of nucleolar protein NOP56 (NOP56); LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT3G12860.1); Has 24182 Blast hits to 12540 proteins in 912 species: Archae - 265; Bacteria - 1523; Metazoa - 8592; Fungi - 2628; Plants - 1300; Viruses - 179; Other Eukaryotes - 9695 (source: NCBI BLink). & (reliability: 1140.0) & (original description: no original description)


Gene families : OG_42_0003242 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003242_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00001073.20
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
167367 No alias homolog of nucleolar protein NOP56 0.03 Orthogroups_2024-Update
A4A49_34611 No alias putative nucleolar protein 5-2 0.02 Orthogroups_2024-Update
At1g56110 No alias At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7] 0.09 Orthogroups_2024-Update
At3g12860 No alias NOP56-like pre RNA processing ribonucleoprotein... 0.01 Orthogroups_2024-Update
Bradi1g18730 No alias NOP56-like pre RNA processing ribonucleoprotein 0.13 Orthogroups_2024-Update
Bradi1g32180 No alias homolog of nucleolar protein NOP56 0.1 Orthogroups_2024-Update
Brara.C03437.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.07 Orthogroups_2024-Update
Brara.F00004.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.1 Orthogroups_2024-Update
Brara.H00011.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.08 Orthogroups_2024-Update
Cre12.g525200 No alias homolog of nucleolar protein NOP56 0.12 Orthogroups_2024-Update
GRMZM2G110233 No alias homolog of nucleolar protein NOP56 0.02 Orthogroups_2024-Update
Glyma.07G102600 No alias homolog of nucleolar protein NOP56 0.05 Orthogroups_2024-Update
Glyma.17G128400 No alias homolog of nucleolar protein NOP56 0.04 Orthogroups_2024-Update
HORVU1Hr1G083960.3 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.03 Orthogroups_2024-Update
HORVU2Hr1G022140.3 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.09 Orthogroups_2024-Update
Kfl00017_0010 kfl00017_0010_v1.... (at1g56110 : 637.0) NOP56-like protein; homolog of... 0.03 Orthogroups_2024-Update
LOC_Os03g22880 No alias nucleolar protein 5A, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g23840.1 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 Orthogroups_2024-Update
PSME_00040484-RA No alias (at1g56110 : 422.0) NOP56-like protein; homolog of... 0.02 Orthogroups_2024-Update
Potri.012G095400 No alias homolog of nucleolar protein NOP56 0.04 Orthogroups_2024-Update
Potri.015G092900 No alias homolog of nucleolar protein NOP56 0.06 Orthogroups_2024-Update
Pp1s15_447V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.9G403000.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.09 Orthogroups_2024-Update
Sobic.001G371100.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.08 Orthogroups_2024-Update
Solyc01g100570 No alias Nucleolar protein NOP56 (AHRD V3.3 *** A0A061G5W0_THECC) 0.12 Orthogroups_2024-Update
Sopen01g044070 No alias Putative snoRNA binding domain 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012974 NOP5_N 4 69
IPR002687 Nop_dom 177 410
No external refs found!