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  5. evm.model.tig00001130.27

evm.model.tig00001130.27


Description : (at5g55550 : 194.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G26650.2). & (q08935|roc1_nicsy : 91.7) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) - Nicotiana sylvestris (Wood tobacco) & (reliability: 388.0) & (original description: no original description)


Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00001130.27
Cluster HCCA clusters: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
4662 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 Orthogroups_2024-Update
At2g33410 No alias Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791] 0.02 Orthogroups_2024-Update
At4g14300 No alias Heterogeneous nuclear ribonucleoprotein 1... 0.02 Orthogroups_2024-Update
Bradi3g08380 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 Orthogroups_2024-Update
Brara.D01071.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_141102g0010 No alias (at3g13224 : 259.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
MA_79622g0010 No alias (at5g55550 : 245.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
PSME_00044178-RA No alias (at5g40490 : 265.0) RNA-binding (RRM/RBD/RNP motifs)... 0.01 Orthogroups_2024-Update
PSME_00053276-RA No alias (at3g07810 : 272.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
Potri.001G370300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 Orthogroups_2024-Update
Potri.003G040900 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Seita.2G370100.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.9G226400.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc09g090520 No alias RNA-binding protein-like (AHRD V3.3 *-* Q8L779_ARATH) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 14 78
IPR000504 RRM_dom 106 171
No external refs found!