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Description : (at3g44680 : 270.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 263.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 540.0) & (original description: no original description)
Gene families : OG_42_0000706 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000706_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Cyanophora release: evm.model.tig00001307.14 | |
| Cluster | HCCA clusters: Cluster_143 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 74186 | No alias | histone deacetylase 1 | 0.02 | Orthogroups_2024-Update | |
| Cre16.g673150 | No alias | histone deacetylase 9 | 0.02 | Orthogroups_2024-Update | |
| MA_4299g0010 | No alias | (at4g38130 : 609.0) Encodes a histone deacetylase that... | 0.02 | Orthogroups_2024-Update | |
| PSME_00009611-RA | No alias | (at4g38130 : 703.0) Encodes a histone deacetylase that... | 0.01 | Orthogroups_2024-Update | |
| Potri.004G209800 | No alias | histone deacetylase 1 | 0.01 | Orthogroups_2024-Update | |
| Seita.1G037700.1 | No alias | deacetylase component *(HDA19) of SNL-HDA19 histone... | 0.01 | Orthogroups_2024-Update | |
| Sobic.004G091200.1 | No alias | deacetylase component *(HDA19) of SNL-HDA19 histone... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
| BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR023801 | His_deacetylse_dom | 22 | 203 |
| No external refs found! |