1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. evm.model.tig00001333.27

evm.model.tig00001333.27


Description : (at3g50670 : 213.0) Encodes U1 snRNP 70K; U1 small nuclear ribonucleoprotein-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (InterPro:IPR022023), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G43370.1); Has 501 Blast hits to 501 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 126; Plants - 97; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). & (reliability: 426.0) & (original description: no original description)


Gene families : OG_42_0004628 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004628_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00001333.27
Cluster HCCA clusters: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Bradi3g21360 No alias U1 small nuclear ribonucleoprotein-70K 0.01 Orthogroups_2024-Update
Bradi3g30430 No alias U1 small nuclear ribonucleoprotein-70K 0.02 Orthogroups_2024-Update
Pp1s332_45V6 No alias u1 snrnp 0.02 Orthogroups_2024-Update
Sopen02g030100 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Predicted GO
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Predicted GO
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Predicted GO
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR022023 U1snRNP70_N 39 127
IPR000504 RRM_dom 138 207
No external refs found!