1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. evm.model.tig00001339.22

evm.model.tig00001339.22


Description : (at3g19760 : 627.0) Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles.; eukaryotic initiation factor 4A-III (EIF4A-III); FUNCTIONS IN: protein binding, ATP-dependent helicase activity; INVOLVED IN: mRNA processing, response to hypoxia; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G51380.1); Has 50040 Blast hits to 49280 proteins in 3163 species: Archae - 836; Bacteria - 27183; Metazoa - 6400; Fungi - 4843; Plants - 2693; Viruses - 42; Other Eukaryotes - 8043 (source: NCBI BLink). & (p41380|if4a3_nicpl : 619.0) Eukaryotic initiation factor 4A-3 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 1254.0) & (original description: no original description)


Gene families : OG_42_0000623 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00001339.22
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
A4A49_62264 No alias eukaryotic initiation factor 4a-11 0.01 Orthogroups_2024-Update
At1g54270 No alias eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1] 0.01 Orthogroups_2024-Update
At3g19760 No alias Eukaryotic initiation factor 4A-III homolog... 0.03 Orthogroups_2024-Update
Bradi3g60590 No alias eukaryotic initiation factor 4A-III 0.03 Orthogroups_2024-Update
Brara.E02728.1 No alias mRNA unwinding factor *(eIF4A)) 0.02 Orthogroups_2024-Update
GRMZM2G018947 No alias eukaryotic initiation factor 4A-III 0.02 Orthogroups_2024-Update
Glyma.09G065600 No alias eukaryotic translation initiation factor 4A1 0.01 Orthogroups_2024-Update
Glyma.13G106200 No alias eukaryotic translation initiation factor 4A1 0.01 Orthogroups_2024-Update
Glyma.13G347900 No alias eif4a-2 0.01 Orthogroups_2024-Update
Glyma.15G171800 No alias eukaryotic translation initiation factor 4A1 0.03 Orthogroups_2024-Update
Glyma.17G053200 No alias eif4a-2 0.02 Orthogroups_2024-Update
HORVU6Hr1G094560.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.01 Orthogroups_2024-Update
MA_10436040g0020 No alias (p41380|if4a3_nicpl : 715.0) Eukaryotic initiation... 0.02 Orthogroups_2024-Update
PSME_00024625-RA No alias (p41380|if4a3_nicpl : 382.0) Eukaryotic initiation... 0.03 Orthogroups_2024-Update
Pp1s275_62V6 No alias dead box atp-dependent rna 0.02 Orthogroups_2024-Update
Sobic.004G356900.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.01 Orthogroups_2024-Update
Solyc12g096000 No alias RNA helicase DEAD41 0.02 Orthogroups_2024-Update
Sopen11g015760 No alias DEAD/DEAH box helicase 0.01 Orthogroups_2024-Update
Sopen12g031890 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003352 regulation of cilium movement IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004807 triose-phosphate isomerase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0030030 cell projection organization IEP Predicted GO
BP GO:0030031 cell projection assembly IEP Predicted GO
BP GO:0032879 regulation of localization IEP Predicted GO
BP GO:0032886 regulation of microtubule-based process IEP Predicted GO
CC GO:0034464 BBSome IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044441 ciliary part IEP Predicted GO
CC GO:0044463 cell projection part IEP Predicted GO
BP GO:0044782 cilium organization IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0051270 regulation of cellular component movement IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0060271 cilium assembly IEP Predicted GO
BP GO:0060632 regulation of microtubule-based movement IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0120031 plasma membrane bounded cell projection assembly IEP Predicted GO
BP GO:0120036 plasma membrane bounded cell projection organization IEP Predicted GO
CC GO:0120038 plasma membrane bounded cell projection part IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 245 353
IPR011545 DEAD/DEAH_box_helicase_dom 54 203
No external refs found!