Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HY03_POPTR)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc05g013200 | |
Cluster | HCCA clusters: Cluster_164 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
442088 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
462 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
At3g13770 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
At4g18750 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | Orthogroups_2024-Update | |
Brara.A02032.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.E01751.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.F03480.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G367355 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | Orthogroups_2024-Update | |
Glyma.01G180600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.01G228000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.05G008800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.05G125500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.05G244300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.06G311600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.07G068800 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.08G117400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.10G277600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.11G213300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.14G224400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G273200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.18G085900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G014730.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU6Hr1G063760.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
LOC_Os07g20420 | No alias | tetratricopeptide-like helical, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_27147g0010 | No alias | (at3g49170 : 606.0) embryo defective 2261 (EMB2261);... | 0.02 | Orthogroups_2024-Update | |
PSME_00044871-RA | No alias | (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... | 0.01 | Orthogroups_2024-Update | |
PSME_00048766-RA | No alias | (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... | 0.01 | Orthogroups_2024-Update | |
Potri.002G175900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.010G161800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.015G047600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.016G128900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Pp1s26_175V6 | No alias | T28P6.20; pentatricopeptide (PPR) repeat-containing... | 0.02 | Orthogroups_2024-Update | |
Seita.1G076000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.3G244400.1 | No alias | RNA editing factor *(MEF32) | 0.01 | Orthogroups_2024-Update | |
Seita.5G065900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.5G385400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.5G468800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G358900.3 | No alias | RNA editing factor *(OTP90) | 0.03 | Orthogroups_2024-Update | |
Sobic.003G333200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.009G079400.1 | No alias | RNA editing factor *(ECD1) | 0.02 | Orthogroups_2024-Update | |
Sopen01g002910 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen01g041280 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g033370 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g011150 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g024500 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g026730 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g034990 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen04g026710 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen04g036510 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen05g002740 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen05g018650 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen07g026910 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
Sopen10g003810 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen10g024640 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen11g001900 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
Sopen11g002630 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen12g021390 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Predicted GO |
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Predicted GO |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predicted GO |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
MF | GO:0003995 | acyl-CoA dehydrogenase activity | IEP | Predicted GO |
MF | GO:0004143 | diacylglycerol kinase activity | IEP | Predicted GO |
MF | GO:0004180 | carboxypeptidase activity | IEP | Predicted GO |
MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Predicted GO |
MF | GO:0004888 | transmembrane signaling receptor activity | IEP | Predicted GO |
MF | GO:0004970 | ionotropic glutamate receptor activity | IEP | Predicted GO |
MF | GO:0005230 | extracellular ligand-gated ion channel activity | IEP | Predicted GO |
CC | GO:0005849 | mRNA cleavage factor complex | IEP | Predicted GO |
BP | GO:0005976 | polysaccharide metabolic process | IEP | Predicted GO |
BP | GO:0006073 | cellular glucan metabolic process | IEP | Predicted GO |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Predicted GO |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Predicted GO |
BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006378 | mRNA polyadenylation | IEP | Predicted GO |
BP | GO:0007205 | protein kinase C-activating G protein-coupled receptor signaling pathway | IEP | Predicted GO |
MF | GO:0008066 | glutamate receptor activity | IEP | Predicted GO |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Predicted GO |
MF | GO:0008238 | exopeptidase activity | IEP | Predicted GO |
MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
BP | GO:0009250 | glucan biosynthetic process | IEP | Predicted GO |
MF | GO:0015276 | ligand-gated ion channel activity | IEP | Predicted GO |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Predicted GO |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predicted GO |
MF | GO:0022824 | transmitter-gated ion channel activity | IEP | Predicted GO |
MF | GO:0022834 | ligand-gated channel activity | IEP | Predicted GO |
MF | GO:0022835 | transmitter-gated channel activity | IEP | Predicted GO |
MF | GO:0030594 | neurotransmitter receptor activity | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Predicted GO |
MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | Predicted GO |
MF | GO:0038023 | signaling receptor activity | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
BP | GO:0044042 | glucan metabolic process | IEP | Predicted GO |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | Predicted GO |
MF | GO:0046527 | glucosyltransferase activity | IEP | Predicted GO |
BP | GO:0051273 | beta-glucan metabolic process | IEP | Predicted GO |
BP | GO:0051274 | beta-glucan biosynthetic process | IEP | Predicted GO |
MF | GO:0060089 | molecular transducer activity | IEP | Predicted GO |
MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
MF | GO:0070008 | serine-type exopeptidase activity | IEP | Predicted GO |
BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 470 | 595 |
IPR002885 | Pentatricopeptide_repeat | 372 | 394 |
IPR002885 | Pentatricopeptide_repeat | 335 | 362 |
IPR002885 | Pentatricopeptide_repeat | 271 | 294 |
IPR002885 | Pentatricopeptide_repeat | 443 | 466 |
IPR002885 | Pentatricopeptide_repeat | 300 | 325 |
IPR002885 | Pentatricopeptide_repeat | 195 | 239 |
No external refs found! |