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- Sequence
- evm.model.tig00020554.10
evm.model.tig00020554.10
Description : (at5g45140 : 788.0) Encodes a subunit of RNA polymerase III (aka RNA polymerase C).; nuclear RNA polymerase C2 (NRPC2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT4G21710.1); Has 31946 Blast hits to 25220 proteins in 8516 species: Archae - 496; Bacteria - 14545; Metazoa - 599; Fungi - 7189; Plants - 2320; Viruses - 240; Other Eukaryotes - 6557 (source: NCBI BLink). & (q85bw1|rpob_antfo : 189.0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) - Anthoceros formosae (Hornwort) & (reliability: 1576.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Cyanophora release: evm.model.tig00020554.10 | |
| Cluster | HCCA clusters: Cluster_98 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| 148107 | No alias | DNA-directed RNA polymerase family protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.15G172100 | No alias | DNA-directed RNA polymerase family protein | 0.02 | Orthogroups_2024-Update | |
| PSME_00021632-RA | No alias | (at3g18090 : 612.0) Encodes a subunit of RNA polymerase... | 0.01 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | None | Extended |
| MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
| MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | InterProScan predictions |
| MF | GO:0005488 | binding | None | Extended |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0006351 | transcription, DNA-templated | IEA | InterProScan predictions |
| BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
| BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0009058 | biosynthetic process | None | Extended |
| BP | GO:0009059 | macromolecule biosynthetic process | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0016070 | RNA metabolic process | None | Extended |
| MF | GO:0016740 | transferase activity | None | Extended |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | None | Extended |
| MF | GO:0016779 | nucleotidyltransferase activity | None | Extended |
| BP | GO:0018130 | heterocycle biosynthetic process | None | Extended |
| BP | GO:0019438 | aromatic compound biosynthetic process | None | Extended |
| BP | GO:0032774 | RNA biosynthetic process | None | Extended |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | None | Extended |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | None | Extended |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | None | Extended |
| BP | GO:0043170 | macromolecule metabolic process | None | Extended |
| BP | GO:0044237 | cellular metabolic process | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0044249 | cellular biosynthetic process | None | Extended |
| BP | GO:0044260 | cellular macromolecule metabolic process | None | Extended |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | None | Extended |
| BP | GO:0046483 | heterocycle metabolic process | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| BP | GO:0097659 | nucleic acid-templated transcription | None | Extended |
| MF | GO:0097747 | RNA polymerase activity | None | Extended |
| MF | GO:0140098 | catalytic activity, acting on RNA | None | Extended |
| BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| BP | GO:1901576 | organic substance biosynthetic process | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| BP | GO:0006353 | DNA-templated transcription, termination | IEP | Predicted GO |
| BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
