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  5. evm.model.tig00020703.9

evm.model.tig00020703.9


Description : (at2g20580 : 183.0) encoding the RPN subunits of the 26S proteasome; 26S proteasome regulatory subunit S2 1A (RPN1A); FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: regulation of cell cycle, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit (InterPro:IPR016643), Armadillo-type fold (InterPro:IPR016024), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit S2 1B (TAIR:AT4G28470.1); Has 1002 Blast hits to 968 proteins in 295 species: Archae - 0; Bacteria - 4; Metazoa - 376; Fungi - 294; Plants - 141; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink). & (reliability: 366.0) & (original description: no original description)


Gene families : OG_42_0003516 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003516_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00020703.9
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
At2g20580 No alias 26S proteasome non-ATPase regulatory subunit 2 homolog... 0.01 Orthogroups_2024-Update
Bradi3g03720 No alias 26S proteasome regulatory subunit S2 1A 0.02 Orthogroups_2024-Update
Brara.A00873.1 No alias regulatory component *(RPN1) of 26S proteasome 0.05 Orthogroups_2024-Update
Cre16.g676197 No alias 26S proteasome regulatory subunit S2 1B 0.07 Orthogroups_2024-Update
Kfl00093_0190 kfl00093_0190_v1.1 (at2g20580 : 1018.0) encoding the RPN subunits of the... 0.03 Orthogroups_2024-Update
Mp5g07110.1 No alias regulatory component RPN1 of 26S proteasome 0.02 Orthogroups_2024-Update
Potri.017G014800 No alias 26S proteasome regulatory subunit S2 1A 0.07 Orthogroups_2024-Update
Seita.1G089700.1 No alias regulatory component *(RPN1) of 26S proteasome 0.02 Orthogroups_2024-Update
Seita.7G152200.1 No alias regulatory component *(RPN1) of 26S proteasome 0.01 Orthogroups_2024-Update
Sobic.004G039600.1 No alias regulatory component *(RPN1) of 26S proteasome 0.05 Orthogroups_2024-Update
Solyc07g053650 No alias 26S proteasome regulatory subunit (AHRD V3.3 *** I0YWJ7_COCSC) 0.04 Orthogroups_2024-Update
evm.model.contig_2614.2 No alias (at2g20580 : 457.0) encoding the RPN subunits of the 26S... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP Predicted GO
CC GO:0000229 cytoplasmic chromosome IEP Predicted GO
CC GO:0000262 mitochondrial chromosome IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004725 protein tyrosine phosphatase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007005 mitochondrion organization IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!