1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. evm.model.tig00020723.108

evm.model.tig00020723.108


Description : (at1g59760 : 938.0) RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink). & (reliability: 1876.0) & (original description: no original description)


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00020723.108
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
A4A49_05892 No alias dexh-box atp-dependent rna helicase dexh11 0.01 Orthogroups_2024-Update
A4A49_16214 No alias dexh-box atp-dependent rna helicase dexh9 0.02 Orthogroups_2024-Update
A4A49_32982 No alias dexh-box atp-dependent rna helicase dexh10 0.01 Orthogroups_2024-Update
Bradi1g52230 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.11 Orthogroups_2024-Update
Bradi4g24170 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 Orthogroups_2024-Update
Brara.A02352.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.06 Orthogroups_2024-Update
Brara.E03073.1 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 Orthogroups_2024-Update
Brara.I01587.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 Orthogroups_2024-Update
Cre02.g117900 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 Orthogroups_2024-Update
Cre06.g289950 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
GRMZM2G040995 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.01 Orthogroups_2024-Update
Glyma.08G361900 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
Glyma.18G067400 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.01 Orthogroups_2024-Update
HORVU2Hr1G028060.16 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.07 Orthogroups_2024-Update
HORVU7Hr1G001080.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 Orthogroups_2024-Update
Kfl00024_0010 kfl00024_0010_v1.1 (at3g46960 : 612.0) RNA helicase, ATP-dependent,... 0.03 Orthogroups_2024-Update
Kfl00264_0180 kfl00264_0180_v1.1 (at1g59760 : 1027.0) RNA helicase, ATP-dependent,... 0.02 Orthogroups_2024-Update
LOC_Os11g07500 No alias DSHCT domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g18140 No alias superkiller viralicidic activity 2-like 2, putative, expressed 0.02 Orthogroups_2024-Update
MA_107869g0010 No alias (at1g59760 : 469.0) RNA helicase, ATP-dependent,... 0.01 Orthogroups_2024-Update
PSME_00006076-RA No alias (at1g59760 : 1096.0) RNA helicase, ATP-dependent,... 0.01 Orthogroups_2024-Update
Potri.004G228700 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
Pp1s58_31V6 No alias superkiller viralicidic activity 2-like 2 0.01 Orthogroups_2024-Update
Pp1s69_14V6 No alias superkiller viralicidic activity 2-like 2 0.07 Orthogroups_2024-Update
Seita.4G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.13 Orthogroups_2024-Update
Sobic.010G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.1 Orthogroups_2024-Update
Solyc01g103080 No alias ATP-dependent RNA helicase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen01g045490 No alias rRNA-processing arch domain 0.02 Orthogroups_2024-Update
Sopen05g027830 No alias rRNA-processing arch domain 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006189 'de novo' IMP biosynthetic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012961 Ski2_C 858 1023
IPR025696 rRNA_proc-arch_dom 582 842
IPR011545 DEAD/DEAH_box_helicase_dom 140 286
No external refs found!