- Home
- Species
- Cyanophora paradoxa
- Sequence
- evm.model.tig00020734.25
evm.model.tig00020734.25
Description : (at3g22330 : 256.0) DEAD-box protein required for efficient group II intron splicing in mitochondria.; putative mitochondrial RNA helicase 2 (PMH2); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: response to cold, Group II intron splicing; LOCATED IN: mitochondrion, nucleolus, cell wall, protein complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH3) (TAIR:AT5G26742.2); Has 113280 Blast hits to 72794 proteins in 3598 species: Archae - 1390; Bacteria - 52148; Metazoa - 22767; Fungi - 9352; Plants - 8202; Viruses - 661; Other Eukaryotes - 18760 (source: NCBI BLink). & (q41382|rh7_spiol : 227.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (reliability: 512.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Cyanophora release: evm.model.tig00020734.25 | |
| Cluster | HCCA clusters: Cluster_108 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| Brara.A02729.1 | No alias | group-II intron splicing RNA helicase *(PMH) | 0.02 | Orthogroups_2024-Update | |
| Brara.I00503.1 | No alias | group-II intron splicing RNA helicase *(RH3) | 0.03 | Orthogroups_2024-Update | |
| Brara.I00682.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
| PSME_00014810-RA | No alias | (q41382|rh7_spiol : 645.0) DEAD-box ATP-dependent RNA... | 0.01 | Orthogroups_2024-Update | |
| Potri.015G133400 | No alias | DEAD box RNA helicase (PRH75) | 0.01 | Orthogroups_2024-Update | |
| Seita.3G386700.1 | No alias | group-II intron splicing RNA helicase *(PMH) | 0.02 | Orthogroups_2024-Update | |
| Sobic.008G165900.1 | No alias | group-II intron splicing RNA helicase *(PMH) | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0000166 | nucleotide binding | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
| MF | GO:0005488 | binding | None | Extended |
| MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
| MF | GO:0008144 | drug binding | None | Extended |
| MF | GO:0017076 | purine nucleotide binding | None | Extended |
| MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
| MF | GO:0032553 | ribonucleotide binding | None | Extended |
| MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
| MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
| MF | GO:0036094 | small molecule binding | None | Extended |
| MF | GO:0043167 | ion binding | None | Extended |
| MF | GO:0043168 | anion binding | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
| MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| BP | GO:0000959 | mitochondrial RNA metabolic process | IEP | Predicted GO |
| MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
| MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
| MF | GO:0005525 | GTP binding | IEP | Predicted GO |
| CC | GO:0005730 | nucleolus | IEP | Predicted GO |
| CC | GO:0005739 | mitochondrion | IEP | Predicted GO |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006413 | translational initiation | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| MF | GO:0008519 | ammonium transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0015696 | ammonium transport | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
| MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR001650 | Helicase_C | 309 | 385 |
| IPR011545 | DEAD/DEAH_box_helicase_dom | 201 | 266 |
| IPR011545 | DEAD/DEAH_box_helicase_dom | 116 | 190 |
