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  5. Solyc05g023710

Solyc05g023710


Description : Nucleolar complex protein 2 isoform 2 (AHRD V3.3 *** A0A061FUS6_THECC)


Gene families : OG_42_0002326 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g023710
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
144099 No alias Noc2p family 0.04 Orthogroups_2024-Update
At2g18220 No alias Nucleolar complex protein 2 homolog... 0.09 Orthogroups_2024-Update
At3g55510 No alias Noc2p family [Source:UniProtKB/TrEMBL;Acc:Q0WVH0] 0.11 Orthogroups_2024-Update
Bradi3g29890 No alias Noc2p family 0.06 Orthogroups_2024-Update
Bradi4g01080 No alias Noc2p family 0.11 Orthogroups_2024-Update
Brara.G00202.1 No alias component *(NOC2) of ribosomal-subunit proteome nuclear... 0.08 Orthogroups_2024-Update
Brara.I03803.1 No alias component *(NOC2) of ribosomal-subunit proteome nuclear... 0.13 Orthogroups_2024-Update
Cre09.g391652 No alias Noc2p family 0.06 Orthogroups_2024-Update
GRMZM2G131793 No alias Noc2p family 0.03 Orthogroups_2024-Update
GRMZM2G374385 No alias Noc2p family 0.03 Orthogroups_2024-Update
Glyma.17G186500 No alias Noc2p family 0.09 Orthogroups_2024-Update
Kfl00106_0260 kfl00106_0260_v1.1 (at2g18220 : 486.0) Noc2p family; INVOLVED IN:... 0.04 Orthogroups_2024-Update
LOC_Os12g06610 No alias nucleolar complex protein 2, putative, expressed 0.02 Orthogroups_2024-Update
Mp1g23860.1 No alias component NOC2 of ribosomal subunit nuclear export complexes 0.03 Orthogroups_2024-Update
Potri.001G012800 No alias Noc2p family 0.09 Orthogroups_2024-Update
Potri.008G043400 No alias Noc2p family 0.08 Orthogroups_2024-Update
Pp1s18_81V6 No alias Nucleolar complex protein 2 homolog (NOC2 protein... 0.06 Orthogroups_2024-Update
Seita.4G210700.1 No alias component *(NOC2) of ribosomal-subunit proteome nuclear... 0.13 Orthogroups_2024-Update
Seita.9G206700.1 No alias component *(NOC2) of ribosomal-subunit proteome nuclear... 0.04 Orthogroups_2024-Update
Sobic.001G206500.1 No alias component *(NOC2) of ribosomal-subunit proteome nuclear... 0.07 Orthogroups_2024-Update
Sobic.005G028100.1 No alias component *(NOC2) of ribosomal-subunit proteome nuclear... 0.1 Orthogroups_2024-Update
Sopen02g026290 No alias Noc2p family 0.04 Orthogroups_2024-Update
Sopen05g018320 No alias Noc2p family 0.05 Orthogroups_2024-Update
evm.model.contig_3494.9 No alias (at2g18220 : 99.0) Noc2p family; INVOLVED IN:... 0.06 Orthogroups_2024-Update
evm.model.tig00020610.71 No alias (at2g18220 : 250.0) Noc2p family; INVOLVED IN:... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005343 Noc2 365 657
No external refs found!