Description : (at2g13370 : 202.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 173.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 404.0) & (original description: no original description)
Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Cyanophora release: evm.model.tig00020960.24 | |
Cluster | HCCA clusters: Cluster_52 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
155996 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.08 | Orthogroups_2024-Update | |
164481 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.04 | Orthogroups_2024-Update | |
440203 | No alias | chromatin-remodeling protein 11 | 0.02 | Orthogroups_2024-Update | |
440815 | No alias | chromatin remodeling 5 | 0.04 | Orthogroups_2024-Update | |
A4A49_03849 | No alias | protein chromatin remodeling 4 | 0.03 | Orthogroups_2024-Update | |
At2g25170 | No alias | chromatin remodeling factor CHD3 (PICKLE)... | 0.02 | Orthogroups_2024-Update | |
At2g28290 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | Orthogroups_2024-Update | |
At2g44980 | No alias | Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45] | 0.01 | Orthogroups_2024-Update | |
At3g06400 | No alias | Chromatin-remodeling complex ATPase... | 0.03 | Orthogroups_2024-Update | |
At5g19310 | No alias | Probable ATP-dependent DNA helicase CHR23... | 0.02 | Orthogroups_2024-Update | |
At5g44800 | No alias | PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2] | 0.02 | Orthogroups_2024-Update | |
Bradi1g18910 | No alias | chromatin remodeling 5 | 0.04 | Orthogroups_2024-Update | |
Bradi1g26940 | No alias | chromatin remodeling 4 | 0.04 | Orthogroups_2024-Update | |
Bradi1g47367 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.02 | Orthogroups_2024-Update | |
Bradi2g35740 | No alias | chromatin-remodeling protein 11 | 0.02 | Orthogroups_2024-Update | |
Bradi2g36380 | No alias | Homeotic gene regulator | 0.03 | Orthogroups_2024-Update | |
Brara.A03548.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Brara.J01708.1 | No alias | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.02 | Orthogroups_2024-Update | |
Cre12.g508150 | No alias | chromatin-remodeling protein 11 | 0.02 | Orthogroups_2024-Update | |
Cre12.g537671 | No alias | chromatin remodeling 4 | 0.03 | Orthogroups_2024-Update | |
GRMZM2G010085 | No alias | chromatin remodeling factor17 | 0.01 | Orthogroups_2024-Update | |
GRMZM2G097289 | No alias | Homeotic gene regulator | 0.02 | Orthogroups_2024-Update | |
Glyma.01G175300 | No alias | chromatin remodeling 1 | 0.01 | Orthogroups_2024-Update | |
Glyma.02G281000 | No alias | chromatin remodeling 5 | 0.03 | Orthogroups_2024-Update | |
Glyma.04G062400 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.05 | Orthogroups_2024-Update | |
Glyma.05G131500 | No alias | chromatin remodeling 4 | 0.02 | Orthogroups_2024-Update | |
Glyma.06G063400 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.02 | Orthogroups_2024-Update | |
Glyma.07G252100 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.03 | Orthogroups_2024-Update | |
Glyma.11G004100 | No alias | Homeotic gene regulator | 0.06 | Orthogroups_2024-Update | |
Glyma.15G097000 | No alias | chromatin remodeling factor17 | 0.03 | Orthogroups_2024-Update | |
Glyma.17G022300 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.05 | Orthogroups_2024-Update | |
HORVU2Hr1G022450.1 | No alias | component *(CHR5) of SAGA transcription co-activator... | 0.02 | Orthogroups_2024-Update | |
Kfl00590_0040 | kfl00590_0040_v1.1 | (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... | 0.03 | Orthogroups_2024-Update | |
LOC_Os06g08480 | No alias | CHD3-type chromatin-remodeling factor PICKLE, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_10429361g0010 | No alias | (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... | 0.01 | Orthogroups_2024-Update | |
MA_77097g0010 | No alias | (at3g06010 : 290.0) Encodes AtCHR12, a SNF2/Brahma-type... | 0.01 | Orthogroups_2024-Update | |
MA_8990972g0010 | No alias | (at2g25170 : 180.0) Encodes a SWI/SWF nuclear-localized... | 0.02 | Orthogroups_2024-Update | |
Mp1g18560.1 | No alias | CHD3-type chromatin-remodeling factor PICKLE... | 0.01 | Orthogroups_2024-Update | |
Mp3g15030.1 | No alias | chromatin remodeling factor (Iswi) | 0.02 | Orthogroups_2024-Update | |
Mp4g00040.1 | No alias | chromatin remodeling factor (Chd3/Mi-2) | 0.03 | Orthogroups_2024-Update | |
PSME_00001767-RA | No alias | (at5g66750 : 797.0) Protein is similar to SWI2/SNF2... | 0.03 | Orthogroups_2024-Update | |
PSME_00005765-RA | No alias | (q7g8y3|isw2_orysa : 1630.0) Probable chromatin... | 0.02 | Orthogroups_2024-Update | |
PSME_00006567-RA | No alias | (at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);... | 0.03 | Orthogroups_2024-Update | |
PSME_00020446-RA | No alias | (at2g44980 : 160.0) SNF2 domain-containing protein /... | 0.02 | Orthogroups_2024-Update | |
Potri.010G021400 | No alias | chromatin-remodeling protein 11 | 0.01 | Orthogroups_2024-Update | |
Pp1s123_125V6 | No alias | snf2 super family | 0.02 | Orthogroups_2024-Update | |
Pp1s235_76V6 | No alias | chromatin remodeling complex subunit | 0.04 | Orthogroups_2024-Update | |
Pp1s293_34V6 | No alias | chromodomain helicase dna binding protein 1-like | 0.02 | Orthogroups_2024-Update | |
Pp1s33_329V6 | No alias | chromatin remodeling complex subunit | 0.02 | Orthogroups_2024-Update | |
Seita.2G320900.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.02 | Orthogroups_2024-Update | |
Seita.3G058900.1 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.03 | Orthogroups_2024-Update | |
Seita.4G050000.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.02 | Orthogroups_2024-Update | |
Seita.4G112400.1 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.02 | Orthogroups_2024-Update | |
Sobic.002G404700.1 | No alias | CHD1-type chromatin remodeling factor *(CHR5) &... | 0.02 | Orthogroups_2024-Update | |
Sobic.003G163200.1 | No alias | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.02 | Orthogroups_2024-Update | |
Solyc08g029130 | No alias | chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... | 0.02 | Orthogroups_2024-Update | |
Sopen01g031470 | No alias | SNF2 family N-terminal domain | 0.01 | Orthogroups_2024-Update | |
Sopen01g036380 | No alias | hypothetical protein | 0.02 | Orthogroups_2024-Update | |
Sopen02g017710 | No alias | SNF2 family N-terminal domain | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_2077.13 | No alias | (at2g13370 : 595.0) chromatin remodeling 5 (CHR5);... | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_2672.1 | No alias | (at2g25170 : 447.0) Encodes a SWI/SWF nuclear-localized... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEA | InterProScan predictions |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003677 | DNA binding | IEP | Predicted GO |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
MF | GO:0004386 | helicase activity | IEP | Predicted GO |
MF | GO:0005085 | guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005086 | ARF guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
BP | GO:0006886 | intracellular protein transport | IEP | Predicted GO |
BP | GO:0008104 | protein localization | IEP | Predicted GO |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | Predicted GO |
BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
BP | GO:0009966 | regulation of signal transduction | IEP | Predicted GO |
BP | GO:0010646 | regulation of cell communication | IEP | Predicted GO |
BP | GO:0015031 | protein transport | IEP | Predicted GO |
BP | GO:0015833 | peptide transport | IEP | Predicted GO |
CC | GO:0016021 | integral component of membrane | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016192 | vesicle-mediated transport | IEP | Predicted GO |
CC | GO:0016459 | myosin complex | IEP | Predicted GO |
MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
MF | GO:0017069 | snRNA binding | IEP | Predicted GO |
MF | GO:0017070 | U6 snRNA binding | IEP | Predicted GO |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
BP | GO:0023051 | regulation of signaling | IEP | Predicted GO |
CC | GO:0030117 | membrane coat | IEP | Predicted GO |
CC | GO:0030120 | vesicle coat | IEP | Predicted GO |
CC | GO:0030126 | COPI vesicle coat | IEP | Predicted GO |
MF | GO:0030623 | U5 snRNA binding | IEP | Predicted GO |
CC | GO:0031224 | intrinsic component of membrane | IEP | Predicted GO |
BP | GO:0032012 | regulation of ARF protein signal transduction | IEP | Predicted GO |
BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
BP | GO:0033036 | macromolecule localization | IEP | Predicted GO |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
BP | GO:0042886 | amide transport | IEP | Predicted GO |
CC | GO:0044425 | membrane part | IEP | Predicted GO |
CC | GO:0044431 | Golgi apparatus part | IEP | Predicted GO |
CC | GO:0044433 | cytoplasmic vesicle part | IEP | Predicted GO |
BP | GO:0045184 | establishment of protein localization | IEP | Predicted GO |
BP | GO:0046578 | regulation of Ras protein signal transduction | IEP | Predicted GO |
BP | GO:0046907 | intracellular transport | IEP | Predicted GO |
BP | GO:0048583 | regulation of response to stimulus | IEP | Predicted GO |
MF | GO:0051020 | GTPase binding | IEP | Predicted GO |
BP | GO:0051056 | regulation of small GTPase mediated signal transduction | IEP | Predicted GO |
BP | GO:0051641 | cellular localization | IEP | Predicted GO |
BP | GO:0051649 | establishment of localization in cell | IEP | Predicted GO |
BP | GO:0071702 | organic substance transport | IEP | Predicted GO |
BP | GO:0071705 | nitrogen compound transport | IEP | Predicted GO |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
BP | GO:1902531 | regulation of intracellular signal transduction | IEP | Predicted GO |
No external refs found! |