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  5. evm.model.tig00020961.9

evm.model.tig00020961.9


Description : (at1g48410 : 115.0) Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.; ARGONAUTE 1 (AGO1); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT5G43810.2). & (reliability: 210.0) & (original description: no original description)


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00020961.9
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Bradi1g36907 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Orthogroups_2024-Update
Bradi2g10360 No alias Argonaute family protein 0.01 Orthogroups_2024-Update
GRMZM2G347402 No alias Argonaute family protein 0.01 Orthogroups_2024-Update
MA_594g0010 No alias (at1g48410 : 1189.0) Encodes an RNA Slicer that... 0.01 Orthogroups_2024-Update
Potri.001G213700 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Pp1s208_96V6 No alias argonaute protein group 0.01 Orthogroups_2024-Update
Sobic.008G087200.1 No alias siRNA-integrating factor *(AGO) 0.01 Orthogroups_2024-Update
Sobic.009G003700.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.01 Orthogroups_2024-Update
Sobic.010G180800.2 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Predicted GO
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR003165 Piwi 484 797
No external refs found!