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  5. evm.model.tig00021127.129

evm.model.tig00021127.129


Description : (at3g62290 : 340.0) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.; ADP-ribosylation factor A1E (ARFA1E); CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT2G47170.1). & (p51821|arf1_chlre : 335.0) ADP-ribosylation factor 1 - Chlamydomonas reinhardtii & (reliability: 680.0) & (original description: no original description)


Gene families : OG_42_0000220 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00021127.129
Cluster HCCA clusters: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
140818 No alias ADP-ribosylation factor A1B 0.01 Orthogroups_2024-Update
75668 No alias ADP-ribosylation factor 3 0.01 Orthogroups_2024-Update
A4A49_38206 No alias adp-ribosylation factor 3 0.01 Orthogroups_2024-Update
At1g23490 No alias ADP-ribosylation factor 2-B... 0.01 Orthogroups_2024-Update
At1g70490 No alias ADP-ribosylation factor 2-B... 0.01 Orthogroups_2024-Update
At2g24765 No alias ADP-ribosylation factor 3... 0.01 Orthogroups_2024-Update
Bradi1g04220 No alias ADP-ribosylation factor A1F 0.02 Orthogroups_2024-Update
Bradi1g53867 No alias Ras-related small GTP-binding family protein 0.02 Orthogroups_2024-Update
Bradi2g53076 No alias ADP-ribosylation factor A1F 0.01 Orthogroups_2024-Update
Bradi3g02760 No alias ADP-ribosylation factor B1B 0.01 Orthogroups_2024-Update
Brara.A00601.1 No alias ARF-GTPase *(ARFE) 0.01 Orthogroups_2024-Update
Brara.G02969.1 No alias ARF-GTPase *(ARF1) 0.01 Orthogroups_2024-Update
GRMZM2G106795 No alias ADP-ribosylation factor B1B 0.01 Orthogroups_2024-Update
Glyma.05G006000 No alias ADP-ribosylation factor A1F 0.01 Orthogroups_2024-Update
HORVU0Hr1G027130.1 No alias ARF-GTPase *(ARF1) 0.02 Orthogroups_2024-Update
HORVU1Hr1G068790.1 No alias ARF-GTPase *(ARF1) 0.02 Orthogroups_2024-Update
HORVU5Hr1G111500.2 No alias ARF-GTPase *(ARF1) 0.01 Orthogroups_2024-Update
HORVU7Hr1G061220.1 No alias ARF-GTPase *(ARFE) 0.02 Orthogroups_2024-Update
LOC_Os02g03610 No alias ADP-ribosylation factor, putative, expressed 0.03 Orthogroups_2024-Update
Mp7g13050.1 No alias ARF-GTPase 0.01 Orthogroups_2024-Update
Seita.5G356400.1 No alias ARF-GTPase *(ARF1) 0.01 Orthogroups_2024-Update
Solyc01g100860 No alias ADP-ribosylation factor (AHRD V3.3 *** ARF_VIGUN) 0.02 Orthogroups_2024-Update
Solyc01g100870 No alias ADP-ribosylation factor (AHRD V3.3 *** ARF_VIGUN) 0.03 Orthogroups_2024-Update
Sopen01g022790 No alias ADP-ribosylation factor family 0.01 Orthogroups_2024-Update
evm.model.contig_2150.15 No alias (at3g62290 : 301.0) A member of ARF GTPase family. A... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
MF GO:0005548 phospholipid transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0007155 cell adhesion IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0015914 phospholipid transport IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0022610 biological adhesion IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 7 176
No external refs found!