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  5. evm.model.tig00021350.31

evm.model.tig00021350.31


Description : (at3g05060 : 530.0) SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein; NOP56-like pre RNA processing ribonucleoprotein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT5G27120.1); Has 39712 Blast hits to 18529 proteins in 1244 species: Archae - 275; Bacteria - 3520; Metazoa - 14574; Fungi - 4183; Plants - 1688; Viruses - 262; Other Eukaryotes - 15210 (source: NCBI BLink). & (reliability: 1048.0) & (original description: no original description)


Gene families : OG_42_0003373 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003373_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00021350.31
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
146841 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Orthogroups_2024-Update
A4A49_01090 No alias putative nucleolar protein 5-2 0.03 Orthogroups_2024-Update
At3g05060 No alias Probable nucleolar protein 5-2... 0.05 Orthogroups_2024-Update
Bradi1g18440 No alias NOP56-like pre RNA processing ribonucleoprotein 0.16 Orthogroups_2024-Update
Bradi1g62430 No alias NOP56-like pre RNA processing ribonucleoprotein 0.09 Orthogroups_2024-Update
Brara.F02881.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.08 Orthogroups_2024-Update
Brara.I00439.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.09 Orthogroups_2024-Update
Cre10.g441400 No alias NOP56-like pre RNA processing ribonucleoprotein 0.15 Orthogroups_2024-Update
GRMZM2G124576 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Orthogroups_2024-Update
GRMZM2G125148 No alias NOP56-like pre RNA processing ribonucleoprotein 0.02 Orthogroups_2024-Update
Glyma.11G114300 No alias NOP56-like pre RNA processing ribonucleoprotein 0.07 Orthogroups_2024-Update
Glyma.12G040200 No alias NOP56-like pre RNA processing ribonucleoprotein 0.07 Orthogroups_2024-Update
HORVU2Hr1G020690.6 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.1 Orthogroups_2024-Update
Kfl00291_0060 kfl00291_0060_v1.... (at3g05060 : 613.0) SAR DNA-binding protein, putative,... 0.04 Orthogroups_2024-Update
LOC_Os03g22730 No alias nucleolar protein NOP5-1, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os03g22740 No alias nucleolar protein NOP5-1, putative, expressed 0.01 Orthogroups_2024-Update
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 Orthogroups_2024-Update
PSME_00019428-RA No alias (at3g05060 : 687.0) SAR DNA-binding protein, putative,... 0.01 Orthogroups_2024-Update
Potri.005G045600 No alias NOP56-like pre RNA processing ribonucleoprotein 0.02 Orthogroups_2024-Update
Pp1s11_243V6 No alias nucleolar protein expressed 0.02 Orthogroups_2024-Update
Pp1s22_229V6 No alias nucleolar protein expressed 0.11 Orthogroups_2024-Update
Seita.9G404600.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.13 Orthogroups_2024-Update
Seita.9G404700.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.04 Orthogroups_2024-Update
Sobic.001G372800.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.06 Orthogroups_2024-Update
Sobic.003G407800.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.06 Orthogroups_2024-Update
Solyc05g055880 No alias NOP56-like pre RNA processing ribonucleoprotein (AHRD... 0.02 Orthogroups_2024-Update
Solyc09g083080 No alias MAR-binding protein 0.17 Orthogroups_2024-Update
Sopen05g034280 No alias Putative snoRNA binding domain 0.02 Orthogroups_2024-Update
Sopen09g031960 No alias Putative snoRNA binding domain 0.08 Orthogroups_2024-Update
evm.model.contig_496.10 No alias (at5g27120 : 425.0) SAR DNA-binding protein, putative,... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012974 NOP5_N 2 65
IPR002687 Nop_dom 166 394
No external refs found!