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- Cyanophora paradoxa
- Sequence
- evm.model.tig00021428.19
evm.model.tig00021428.19
Description : (at5g08470 : 170.0) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.; peroxisome 1 (PEX1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Aspartate decarboxylase-like fold (InterPro:IPR009010), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 45022 Blast hits to 26157 proteins in 3042 species: Archae - 1897; Bacteria - 15808; Metazoa - 7500; Fungi - 5597; Plants - 4311; Viruses - 29; Other Eukaryotes - 9880 (source: NCBI BLink). & (q96372|cdc48_capan : 113.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 340.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Cyanophora release: evm.model.tig00021428.19 | |
| Cluster | HCCA clusters: Cluster_171 | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0000166 | nucleotide binding | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0005488 | binding | None | Extended |
| MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
| CC | GO:0005575 | cellular_component | None | Extended |
| CC | GO:0005777 | peroxisome | IEA | InterProScan predictions |
| BP | GO:0006996 | organelle organization | None | Extended |
| BP | GO:0007031 | peroxisome organization | IEA | InterProScan predictions |
| MF | GO:0008144 | drug binding | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0016043 | cellular component organization | None | Extended |
| MF | GO:0017076 | purine nucleotide binding | None | Extended |
| MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
| MF | GO:0032553 | ribonucleotide binding | None | Extended |
| MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
| MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
| MF | GO:0036094 | small molecule binding | None | Extended |
| CC | GO:0042579 | microbody | None | Extended |
| MF | GO:0043167 | ion binding | None | Extended |
| MF | GO:0043168 | anion binding | None | Extended |
| CC | GO:0043226 | organelle | None | Extended |
| CC | GO:0043227 | membrane-bounded organelle | None | Extended |
| CC | GO:0043229 | intracellular organelle | None | Extended |
| CC | GO:0043231 | intracellular membrane-bounded organelle | None | Extended |
| CC | GO:0044424 | intracellular part | None | Extended |
| CC | GO:0044444 | cytoplasmic part | None | Extended |
| CC | GO:0044464 | cell part | None | Extended |
| BP | GO:0071840 | cellular component organization or biogenesis | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
| MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Predicted GO |
| BP | GO:0007165 | signal transduction | IEP | Predicted GO |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Predicted GO |
| BP | GO:0035556 | intracellular signal transduction | IEP | Predicted GO |
| BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
| BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
| BP | GO:0065007 | biological regulation | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR015342 | PEX-N_psi_beta-barrel | 91 | 160 |
| IPR003959 | ATPase_AAA_core | 696 | 810 |
