evm.model.tig00021433.27

Description : (at1g04170 : 690.0) protein synthesis initiation factor eIF2 gamma; eukaryotic translation initiation factor 2 gamma subunit (EIF2 GAMMA); CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT4G18330.2); Has 29259 Blast hits to 29225 proteins in 6532 species: Archae - 651; Bacteria - 17093; Metazoa - 4832; Fungi - 574; Plants - 965; Viruses - 0; Other Eukaryotes - 5144 (source: NCBI BLink). & (q9tjq8|eftu_prowi : 94.7) Elongation factor Tu (EF-Tu) - Prototheca wickerhamii & (reliability: 1380.0) & (original description: no original description)

Gene families : OG_42_0003024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003024_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00021433.27
Cluster	HCCA clusters: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
172686	No alias	eukaryotic translation initiation factor 2 gamma subunit	0.01	Orthogroups_2024-Update
A4A49_00259	No alias	elongation factor tu, plastid	0.02	Orthogroups_2024-Update
A4A49_29054	No alias	hypothetical protein	0.01	Orthogroups_2024-Update
A4A49_40737	No alias	hypothetical protein	0.02	Orthogroups_2024-Update
At1g04170	No alias	Eukaryotic translation initiation factor 2 gamma subunit...	0.04	Orthogroups_2024-Update
Bradi4g02587	No alias	eukaryotic translation initiation factor 2 gamma subunit	0.06	Orthogroups_2024-Update
Cre02.g098450	No alias	eukaryotic translation initiation factor 2 gamma subunit	0.07	Orthogroups_2024-Update
Glyma.08G171500	No alias	eukaryotic translation initiation factor 2 gamma subunit	0.02	Orthogroups_2024-Update
Glyma.15G255900	No alias	eukaryotic translation initiation factor 2 gamma subunit	0.04	Orthogroups_2024-Update
HORVU5Hr1G018660.1	No alias	component *(eIF2-gamma) of eIF2 Met-tRNA binding factor complex	0.05	Orthogroups_2024-Update
Kfl00206_0240	kfl00206_0240_v1.1	(at1g04170 : 800.0) protein synthesis initiation factor...	0.02	Orthogroups_2024-Update
LOC_Os12g41400	No alias	eukaryotic translation initiation factor 2 subunit...	0.02	Orthogroups_2024-Update
Potri.001G129100	No alias	eukaryotic translation initiation factor 2 gamma subunit	0.01	Orthogroups_2024-Update
Pp1s207_94V6	No alias	strong similarity to initiation factor eif-gb	0.02	Orthogroups_2024-Update
Seita.6G007200.1	No alias	component *(eIF2-gamma) of eIF2 Met-tRNA binding factor complex	0.08	Orthogroups_2024-Update
Sobic.002G341800.1	No alias	component *(eIF2-gamma) of eIF2 Met-tRNA binding factor complex	0.01	Orthogroups_2024-Update
Solyc01g066690	No alias	eukaryotic translation initiation factor 2 gamma subunit...	0.04	Orthogroups_2024-Update
Solyc05g054310	No alias	eukaryotic translation initiation factor 2 gamma subunit...	0.04	Orthogroups_2024-Update
Sopen12g034140	No alias	Elongation factor Tu GTP binding domain	0.05	Orthogroups_2024-Update
evm.model.contig_2494.20	No alias	(at1g04170 : 486.0) protein synthesis initiation factor...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
CC	GO:0005575	cellular_component	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
CC	GO:0005956	protein kinase CK2 complex	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
BP	GO:0009987	cellular process	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
MF	GO:0019207	kinase regulator activity	IEP	Predicted GO
MF	GO:0019887	protein kinase regulator activity	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0031369	translation initiation factor binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000795	TF_GTP-bd_dom	39	222
IPR015256	TIF2_gsu_C	348	436
IPR004161	EFTu-like_2	254	336

External Links

No external refs found!

evm.model.tig00021433.27

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation