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  5. Solyc05g048850

Solyc05g048850


Description : RNA helicase DEAD18


Gene families : OG_42_0002506 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002506_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g048850
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Brara.I00038.1 No alias DDX6-type mRNA helicase *(RH12/RH8) 0.03 Orthogroups_2024-Update
Pp1s80_128V6 No alias atp-dependent rna helicase dhh1 0.02 Orthogroups_2024-Update
Seita.1G250700.1 No alias DDX6-type mRNA helicase *(RH12/RH8) 0.03 Orthogroups_2024-Update
Solyc01g094350 No alias RNA helicase DEAD4 0.03 Orthogroups_2024-Update
Sopen01g038140 No alias DEAD/DEAH box helicase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 13 176
IPR001650 Helicase_C 213 320
No external refs found!