Description : (at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.; PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 369.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 872.0) & (original description: no original description)
Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Cyanophora release: evm.model.tig00021623.13 | |
Cluster | HCCA clusters: Cluster_123 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
155996 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.03 | Orthogroups_2024-Update | |
440815 | No alias | chromatin remodeling 5 | 0.02 | Orthogroups_2024-Update | |
At2g44980 | No alias | Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45] | 0.03 | Orthogroups_2024-Update | |
At5g44800 | No alias | PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2] | 0.01 | Orthogroups_2024-Update | |
Bradi1g18910 | No alias | chromatin remodeling 5 | 0.02 | Orthogroups_2024-Update | |
Bradi1g26940 | No alias | chromatin remodeling 4 | 0.03 | Orthogroups_2024-Update | |
Bradi1g44177 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | Orthogroups_2024-Update | |
Bradi1g47367 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.02 | Orthogroups_2024-Update | |
Bradi2g35740 | No alias | chromatin-remodeling protein 11 | 0.02 | Orthogroups_2024-Update | |
Cre08.g377200 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.02 | Orthogroups_2024-Update | |
GRMZM2G316191 | No alias | chromatin remodeling 4 | 0.02 | Orthogroups_2024-Update | |
GRMZM2G467799 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | Orthogroups_2024-Update | |
Glyma.02G281000 | No alias | chromatin remodeling 5 | 0.02 | Orthogroups_2024-Update | |
Glyma.04G062400 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.04 | Orthogroups_2024-Update | |
Glyma.05G131500 | No alias | chromatin remodeling 4 | 0.02 | Orthogroups_2024-Update | |
Glyma.06G063400 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.02 | Orthogroups_2024-Update | |
Glyma.11G004100 | No alias | Homeotic gene regulator | 0.02 | Orthogroups_2024-Update | |
Glyma.15G097000 | No alias | chromatin remodeling factor17 | 0.02 | Orthogroups_2024-Update | |
Glyma.17G022300 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | Orthogroups_2024-Update | |
Glyma.17G023600 | No alias | chromatin remodeling factor17 | 0.02 | Orthogroups_2024-Update | |
HORVU2Hr1G022450.1 | No alias | component *(CHR5) of SAGA transcription co-activator... | 0.01 | Orthogroups_2024-Update | |
HORVU7Hr1G041450.33 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.04 | Orthogroups_2024-Update | |
LOC_Os03g01200 | No alias | SNF2 family N-terminal domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os06g08480 | No alias | CHD3-type chromatin-remodeling factor PICKLE, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os07g31450 | No alias | CHR4/MI-2-LIKE, putative, expressed | 0.01 | Orthogroups_2024-Update | |
MA_10429361g0010 | No alias | (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... | 0.01 | Orthogroups_2024-Update | |
PSME_00009907-RA | No alias | (at2g25170 : 144.0) Encodes a SWI/SWF nuclear-localized... | 0.02 | Orthogroups_2024-Update | |
PSME_00020446-RA | No alias | (at2g44980 : 160.0) SNF2 domain-containing protein /... | 0.02 | Orthogroups_2024-Update | |
Pp1s223_99V6 | No alias | chromodomain helicase dna binding protein 5 | 0.02 | Orthogroups_2024-Update | |
Pp1s317_10V6 | No alias | chromodomain-helicase-dna-binding protein | 0.01 | Orthogroups_2024-Update | |
Seita.4G112400.1 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.01 | Orthogroups_2024-Update | |
Sobic.002G308700.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.02 | Orthogroups_2024-Update | |
Sobic.002G404700.1 | No alias | CHD1-type chromatin remodeling factor *(CHR5) &... | 0.02 | Orthogroups_2024-Update | |
Sobic.010G105200.1 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.02 | Orthogroups_2024-Update | |
Solyc06g054560 | No alias | RNA helicase DEAH-box19 | 0.02 | Orthogroups_2024-Update | |
Solyc08g029130 | No alias | chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... | 0.02 | Orthogroups_2024-Update | |
Sopen01g029280 | No alias | SNF2 family N-terminal domain | 0.02 | Orthogroups_2024-Update | |
Sopen02g017710 | No alias | SNF2 family N-terminal domain | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000041 | transition metal ion transport | IEP | Predicted GO |
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Predicted GO |
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | Predicted GO |
CC | GO:0000439 | transcription factor TFIIH core complex | IEP | Predicted GO |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Predicted GO |
MF | GO:0005215 | transporter activity | IEP | Predicted GO |
MF | GO:0005216 | ion channel activity | IEP | Predicted GO |
MF | GO:0005230 | extracellular ligand-gated ion channel activity | IEP | Predicted GO |
MF | GO:0005375 | copper ion transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0005575 | cellular_component | IEP | Predicted GO |
CC | GO:0005667 | transcription factor complex | IEP | Predicted GO |
BP | GO:0005976 | polysaccharide metabolic process | IEP | Predicted GO |
BP | GO:0006073 | cellular glucan metabolic process | IEP | Predicted GO |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Predicted GO |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Predicted GO |
BP | GO:0006289 | nucleotide-excision repair | IEP | Predicted GO |
BP | GO:0006810 | transport | IEP | Predicted GO |
BP | GO:0006811 | ion transport | IEP | Predicted GO |
BP | GO:0006825 | copper ion transport | IEP | Predicted GO |
MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Predicted GO |
MF | GO:0008276 | protein methyltransferase activity | IEP | Predicted GO |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
BP | GO:0009250 | glucan biosynthetic process | IEP | Predicted GO |
MF | GO:0015075 | ion transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015267 | channel activity | IEP | Predicted GO |
MF | GO:0015276 | ligand-gated ion channel activity | IEP | Predicted GO |
MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0016020 | membrane | IEP | Predicted GO |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Predicted GO |
CC | GO:0016459 | myosin complex | IEP | Predicted GO |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0022803 | passive transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0022834 | ligand-gated channel activity | IEP | Predicted GO |
MF | GO:0022836 | gated channel activity | IEP | Predicted GO |
MF | GO:0022838 | substrate-specific channel activity | IEP | Predicted GO |
MF | GO:0022839 | ion gated channel activity | IEP | Predicted GO |
MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | Predicted GO |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Predicted GO |
MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | Predicted GO |
BP | GO:0035434 | copper ion transmembrane transport | IEP | Predicted GO |
MF | GO:0042054 | histone methyltransferase activity | IEP | Predicted GO |
BP | GO:0044042 | glucan metabolic process | IEP | Predicted GO |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | Predicted GO |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | Predicted GO |
CC | GO:0044459 | plasma membrane part | IEP | Predicted GO |
CC | GO:0044798 | nuclear transcription factor complex | IEP | Predicted GO |
MF | GO:0046527 | glucosyltransferase activity | IEP | Predicted GO |
MF | GO:0046915 | transition metal ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0051179 | localization | IEP | Predicted GO |
BP | GO:0051234 | establishment of localization | IEP | Predicted GO |
BP | GO:0051273 | beta-glucan metabolic process | IEP | Predicted GO |
BP | GO:0051274 | beta-glucan biosynthetic process | IEP | Predicted GO |
BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Predicted GO |
CC | GO:0098797 | plasma membrane protein complex | IEP | Predicted GO |
No external refs found! |