1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g052800

Solyc05g052800


Description : 60S ribosomal protein L35a (AHRD V3.3 *** B6VC50_VERFO)


Gene families : OG_42_0001366 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001366_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g052800
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Brara.B02119.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.D00376.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.G03191.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.I03824.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Cre10.g459250 No alias Ribosomal protein L35Ae family protein 0.07 Orthogroups_2024-Update
GRMZM2G181336 No alias Ribosomal protein L35Ae family protein 0.03 Orthogroups_2024-Update
Glyma.05G132500 No alias Ribosomal protein L35Ae family protein 0.04 Orthogroups_2024-Update
Glyma.08G087000 No alias Ribosomal protein L35Ae family protein 0.06 Orthogroups_2024-Update
Glyma.14G062900 No alias Ribosomal protein L35Ae family protein 0.05 Orthogroups_2024-Update
HORVU6Hr1G083120.2 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU7Hr1G031850.4 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Kfl00148_0220 kfl00148_0220_v1.1 (at3g55750 : 81.6) Ribosomal protein L35Ae family... 0.02 Orthogroups_2024-Update
MA_79041g0010 No alias (at1g74270 : 149.0) Ribosomal protein L35Ae family... 0.03 Orthogroups_2024-Update
Mp1g11470.1 No alias component RPL35a of LSU proteome component 0.03 Orthogroups_2024-Update
PSME_00007301-RA No alias (at1g74270 : 157.0) Ribosomal protein L35Ae family... 0.04 Orthogroups_2024-Update
Potri.010G194200 No alias Ribosomal protein L35Ae family protein 0.04 Orthogroups_2024-Update
Pp1s1_549V6 No alias 60s ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s2_655V6 No alias 60s ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s52_116V6 No alias 60s ribosomal protein 0.05 Orthogroups_2024-Update
Pp1s61_123V6 No alias 60s ribosomal protein 0.04 Orthogroups_2024-Update
Sobic.002G179300.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.004G322200.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.010G070500.1 No alias component *(eL33) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc03g096360 No alias 60S ribosomal protein L35a (AHRD V3.3 *** B6VC50_VERFO) 0.04 Orthogroups_2024-Update
Sopen03g026480 No alias Ribosomal protein L35Ae 0.06 Orthogroups_2024-Update
Sopen05g031310 No alias Ribosomal protein L35Ae 0.03 Orthogroups_2024-Update
Sopen05g031320 No alias Ribosomal protein L35Ae 0.03 Orthogroups_2024-Update
evm.model.contig_2130.2 No alias (at1g74270 : 120.0) Ribosomal protein L35Ae family... 0.08 Orthogroups_2024-Update
evm.model.tig00020723.23 No alias (at3g55750 : 148.0) Ribosomal protein L35Ae family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001780 Ribosomal_L35A 12 99
No external refs found!