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  5. Solyc05g053440

Solyc05g053440


Description : 60S ribosomal protein L29, putative (AHRD V3.3 *** B9RZN1_RICCO)


Gene families : OG_42_0003521 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003521_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc05g053440
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
228166 No alias Ribosomal L29e protein family 0.05 Orthogroups_2024-Update
A4A49_53313 No alias 60s ribosomal protein l29-2 0.12 Orthogroups_2024-Update
At3g06680 No alias 60S ribosomal protein L29 [Source:UniProtKB/TrEMBL;Acc:F4JC32] 0.11 Orthogroups_2024-Update
Bradi2g28170 No alias Ribosomal L29e protein family 0.02 Orthogroups_2024-Update
Bradi4g24635 No alias Ribosomal L29e protein family 0.02 Orthogroups_2024-Update
Brara.E03260.1 No alias component *(eL29) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Cre03.g207050 No alias Ribosomal L29e protein family 0.11 Orthogroups_2024-Update
HORVU1Hr1G059570.2 No alias component *(eL29) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
MA_10433318g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
Mp1g23580.1 No alias component RPL29 of LSU proteome component 0.01 Orthogroups_2024-Update
PSME_00015658-RA No alias no hits & (original description: no original description) 0.09 Orthogroups_2024-Update
Potri.002G196800 No alias Ribosomal L29e protein family 0.07 Orthogroups_2024-Update
Potri.008G107700 No alias Ribosomal L29e protein family 0.05 Orthogroups_2024-Update
Potri.010G142001 No alias Ribosomal L29e protein family 0.04 Orthogroups_2024-Update
Pp1s28_307V6 No alias 60s ribosomal protein l29 0.17 Orthogroups_2024-Update
Pp1s58_102V6 No alias 60s ribosomal protein l29 0.05 Orthogroups_2024-Update
Pp1s79_253V6 No alias 60s ribosomal protein l29 0.15 Orthogroups_2024-Update
Sopen11g022530 No alias Ribosomal L29e protein family 0.04 Orthogroups_2024-Update
evm.model.tig00000269.24 No alias (at3g06680 : 86.3) Ribosomal L29e protein family;... 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002673 Ribosomal_L29e 3 42
No external refs found!