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  5. Solyc05g054920

Solyc05g054920


Description : Serine/arginine-rich-splicing factor RS2Z32 (AHRD V3.3 *** A0A0M8KRK6_NICAT)


Gene families : OG_42_0002115 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002115_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g054920
Cluster HCCA clusters: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
At2g37340 No alias Serine/arginine-rich splicing factor RS2Z33... 0.03 Orthogroups_2024-Update
Brara.C00084.1 No alias RNA splicing factor *(RSZ32/33) 0.03 Orthogroups_2024-Update
Glyma.03G175400 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.04 Orthogroups_2024-Update
PSME_00033406-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Seita.7G272100.1 No alias RNA splicing factor *(RSZ32/33) 0.03 Orthogroups_2024-Update
Sobic.003G064400.1 No alias RNA splicing factor *(RSZ32/33) 0.02 Orthogroups_2024-Update
Sobic.009G056100.1 No alias RNA splicing factor *(RSZ32/33) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 154 169
IPR001878 Znf_CCHC 175 191
IPR000504 RRM_dom 13 73
No external refs found!