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Description : ARM repeat superfamily protein (AHRD V3.3 --* AT1G12930.1)
Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc05g055640 | |
| Cluster | HCCA clusters: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 270247 | No alias | Ribosomal L38e protein family | 0.06 | Orthogroups_2024-Update | |
| A4A49_59471 | No alias | 60s ribosomal protein l38 | 0.07 | Orthogroups_2024-Update | |
| Bradi1g25302 | No alias | Ribosomal L38e protein family | 0.03 | Orthogroups_2024-Update | |
| Bradi3g41837 | No alias | Ribosomal L38e protein family | 0.04 | Orthogroups_2024-Update | |
| Brara.C02203.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Brara.E00357.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
| Brara.I04090.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Cre07.g325746 | No alias | Ribosomal L38e protein family | 0.06 | Orthogroups_2024-Update | |
| Glyma.08G100000 | No alias | Ribosomal L38e protein family | 0.03 | Orthogroups_2024-Update | |
| Kfl00433_0040 | kfl00433_0040_v1.1 | (at3g59540 : 122.0) Ribosomal L38e protein family;... | 0.04 | Orthogroups_2024-Update | |
| MA_20588g0010 | No alias | (at3g59540 : 129.0) Ribosomal L38e protein family;... | 0.05 | Orthogroups_2024-Update | |
| Mp7g14520.1 | No alias | component RPL38 of LSU proteome component | 0.04 | Orthogroups_2024-Update | |
| PSME_00035421-RA | No alias | (at3g59540 : 127.0) Ribosomal L38e protein family;... | 0.07 | Orthogroups_2024-Update | |
| Potri.007G131800 | No alias | Ribosomal L38e protein family | 0.07 | Orthogroups_2024-Update | |
| Potri.010G181200 | No alias | Ribosomal L38e protein family | 0.04 | Orthogroups_2024-Update | |
| Potri.017G020000 | No alias | Ribosomal L38e protein family | 0.03 | Orthogroups_2024-Update | |
| Pp1s227_122V6 | No alias | 60s ribosomal protein l38 | 0.09 | Orthogroups_2024-Update | |
| Pp1s288_10V6 | No alias | 60s ribosomal protein l38 | 0.09 | Orthogroups_2024-Update | |
| Pp1s67_172V6 | No alias | 60s ribosomal protein l38 | 0.09 | Orthogroups_2024-Update | |
| Seita.2G274700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Seita.6G231700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Sobic.007G184600.2 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Sopen05g034080 | No alias | Ribosomal L38e protein family | 0.05 | Orthogroups_2024-Update | |
| Sopen11g004300 | No alias | Ribosomal L38e protein family | 0.07 | Orthogroups_2024-Update | |
| evm.model.tig00021719.6 | No alias | (at3g59540 : 110.0) Ribosomal L38e protein family;... | 0.08 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003724 | RNA helicase activity | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0004004 | ATP-dependent RNA helicase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
| CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006417 | regulation of translation | IEP | Predicted GO |
| BP | GO:0006448 | regulation of translational elongation | IEP | Predicted GO |
| BP | GO:0006449 | regulation of translational termination | IEP | Predicted GO |
| BP | GO:0006452 | translational frameshifting | IEP | Predicted GO |
| BP | GO:0006457 | protein folding | IEP | Predicted GO |
| BP | GO:0006479 | protein methylation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0008026 | ATP-dependent helicase activity | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008186 | RNA-dependent ATPase activity | IEP | Predicted GO |
| BP | GO:0008213 | protein alkylation | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predicted GO |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Predicted GO |
| BP | GO:0010628 | positive regulation of gene expression | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Predicted GO |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0032259 | methylation | IEP | Predicted GO |
| BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0032270 | positive regulation of cellular protein metabolic process | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
| BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0034250 | positive regulation of cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predicted GO |
| MF | GO:0043022 | ribosome binding | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043243 | positive regulation of protein complex disassembly | IEP | Predicted GO |
| BP | GO:0043244 | regulation of protein complex disassembly | IEP | Predicted GO |
| BP | GO:0043414 | macromolecule methylation | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0045727 | positive regulation of translation | IEP | Predicted GO |
| BP | GO:0045901 | positive regulation of translational elongation | IEP | Predicted GO |
| BP | GO:0045905 | positive regulation of translational termination | IEP | Predicted GO |
| BP | GO:0048518 | positive regulation of biological process | IEP | Predicted GO |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Predicted GO |
| BP | GO:0051130 | positive regulation of cellular component organization | IEP | Predicted GO |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Predicted GO |
| BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Predicted GO |
| MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |