Description : Histone H2B (AHRD V3.3 *** K4C323_SOLLC)
Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc06g005390 | |
Cluster | HCCA clusters: Cluster_164 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_60323 | No alias | putative histone h2b.1 | 0.04 | Orthogroups_2024-Update | |
At1g07790 | No alias | Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4] | 0.05 | Orthogroups_2024-Update | |
At1g08170 | No alias | Histone H2B.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGE3] | 0.02 | Orthogroups_2024-Update | |
At2g37470 | No alias | Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0] | 0.04 | Orthogroups_2024-Update | |
At3g46030 | No alias | Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] | 0.03 | Orthogroups_2024-Update | |
At5g02570 | No alias | Histone H2B.9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ45] | 0.02 | Orthogroups_2024-Update | |
At5g59910 | No alias | Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F2] | 0.03 | Orthogroups_2024-Update | |
Brara.B01057.1 | No alias | histone *(H2B) | 0.09 | Orthogroups_2024-Update | |
Brara.F01827.1 | No alias | histone *(H2B) | 0.1 | Orthogroups_2024-Update | |
Brara.I03652.1 | No alias | histone *(H2B) | 0.08 | Orthogroups_2024-Update | |
Brara.J01359.1 | No alias | histone *(H2B) | 0.09 | Orthogroups_2024-Update | |
Brara.J01445.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
Cre06.g264800 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Cre06.g264900 | No alias | Histone superfamily protein | 0.04 | Orthogroups_2024-Update | |
Cre06.g266750 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Cre06.g273850 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Cre06.g274250 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Cre06.g274750 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Cre06.g276900 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Cre12.g504550 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Cre12.g504700 | No alias | Histone superfamily protein | 0.04 | Orthogroups_2024-Update | |
Cre12.g505600 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Cre12.g506200 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Cre13.g570050 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Cre17.g708600 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Cre17.g711750 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G046841 | No alias | Histone superfamily protein | 0.05 | Orthogroups_2024-Update | |
GRMZM2G057852 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G071959 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G141432 | No alias | Histone superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G305027 | No alias | Histone superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G306258 | No alias | Histone superfamily protein | 0.05 | Orthogroups_2024-Update | |
GRMZM2G401147 | No alias | Histone superfamily protein | 0.06 | Orthogroups_2024-Update | |
GRMZM2G472696 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.10G198500 | No alias | Histone superfamily protein | 0.06 | Orthogroups_2024-Update | |
Glyma.11G141600 | No alias | Histone superfamily protein | 0.08 | Orthogroups_2024-Update | |
Glyma.11G141800 | No alias | Histone superfamily protein | 0.06 | Orthogroups_2024-Update | |
Glyma.11G142100 | No alias | Histone superfamily protein | 0.05 | Orthogroups_2024-Update | |
Glyma.12G065100 | No alias | Histone superfamily protein | 0.09 | Orthogroups_2024-Update | |
Glyma.12G065200 | No alias | Histone superfamily protein | 0.05 | Orthogroups_2024-Update | |
Glyma.12G065400 | No alias | Histone superfamily protein | 0.09 | Orthogroups_2024-Update | |
Glyma.13G321600 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.19G173400 | No alias | Histone superfamily protein | 0.05 | Orthogroups_2024-Update | |
Glyma.20G191600 | No alias | Histone superfamily protein | 0.05 | Orthogroups_2024-Update | |
HORVU1Hr1G056530.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G058440.4 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
HORVU1Hr1G066130.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G078480.6 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
HORVU1Hr1G085540.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G013530.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G086610.4 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
HORVU4Hr1G009040.2 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G094500.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU7Hr1G110310.1 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
Kfl01110_0020 | kfl01110_0020_v1.... | (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... | 0.02 | Orthogroups_2024-Update | |
LOC_Os01g05630 | No alias | Core histone H2A/H2B/H3/H4 domain containing protein,... | 0.03 | Orthogroups_2024-Update | |
LOC_Os08g38300 | No alias | Core histone H2A/H2B/H3/H4 domain containing protein,... | 0.03 | Orthogroups_2024-Update | |
Mp4g13450.1 | No alias | histone (H2B) | 0.02 | Orthogroups_2024-Update | |
Mp6g07010.1 | No alias | histone (H2B) | 0.02 | Orthogroups_2024-Update | |
PSME_00000376-RA | No alias | (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... | 0.02 | Orthogroups_2024-Update | |
Sobic.003G200501.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
Sobic.004G265400.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
Sobic.009G164200.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
Sopen03g019890 | No alias | Core histone H2A/H2B/H3/H4 | 0.05 | Orthogroups_2024-Update | |
Sopen05g033890 | No alias | Core histone H2A/H2B/H3/H4 | 0.06 | Orthogroups_2024-Update | |
Sopen06g031230 | No alias | Core histone H2A/H2B/H3/H4 | 0.09 | Orthogroups_2024-Update | |
Sopen06g032230 | No alias | Core histone H2A/H2B/H3/H4 | 0.05 | Orthogroups_2024-Update | |
Sopen11g003790 | No alias | Core histone H2A/H2B/H3/H4 | 0.06 | Orthogroups_2024-Update | |
Sopen11g003800 | No alias | Core histone H2A/H2B/H3/H4 | 0.12 | Orthogroups_2024-Update | |
Sopen11g026180 | No alias | Core histone H2A/H2B/H3/H4 | 0.1 | Orthogroups_2024-Update | |
Sopen12g006850 | No alias | Core histone H2A/H2B/H3/H4 | 0.05 | Orthogroups_2024-Update | |
evm.model.contig_498.4 | No alias | (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00000944.18 | No alias | (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) -... | 0.06 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
CC | GO:0000786 | nucleosome | IEP | Predicted GO |
CC | GO:0000796 | condensin complex | IEP | Predicted GO |
MF | GO:0003684 | damaged DNA binding | IEP | Predicted GO |
MF | GO:0003689 | DNA clamp loader activity | IEP | Predicted GO |
MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
MF | GO:0003774 | motor activity | IEP | Predicted GO |
MF | GO:0003777 | microtubule motor activity | IEP | Predicted GO |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predicted GO |
MF | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | IEP | Predicted GO |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
MF | GO:0004003 | ATP-dependent DNA helicase activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005663 | DNA replication factor C complex | IEP | Predicted GO |
CC | GO:0005694 | chromosome | IEP | Predicted GO |
CC | GO:0005849 | mRNA cleavage factor complex | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
BP | GO:0006260 | DNA replication | IEP | Predicted GO |
BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
BP | GO:0006289 | nucleotide-excision repair | IEP | Predicted GO |
BP | GO:0006323 | DNA packaging | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0006378 | mRNA polyadenylation | IEP | Predicted GO |
BP | GO:0006928 | movement of cell or subcellular component | IEP | Predicted GO |
BP | GO:0006996 | organelle organization | IEP | Predicted GO |
BP | GO:0007017 | microtubule-based process | IEP | Predicted GO |
BP | GO:0007018 | microtubule-based movement | IEP | Predicted GO |
BP | GO:0007059 | chromosome segregation | IEP | Predicted GO |
BP | GO:0007076 | mitotic chromosome condensation | IEP | Predicted GO |
MF | GO:0008017 | microtubule binding | IEP | Predicted GO |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Predicted GO |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
MF | GO:0015631 | tubulin binding | IEP | Predicted GO |
BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Predicted GO |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
BP | GO:0022402 | cell cycle process | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
BP | GO:0030261 | chromosome condensation | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
MF | GO:0033170 | protein-DNA loading ATPase activity | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
MF | GO:0042393 | histone binding | IEP | Predicted GO |
MF | GO:0042623 | ATPase activity, coupled | IEP | Predicted GO |
MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | Predicted GO |
MF | GO:0043140 | ATP-dependent 3'-5' DNA helicase activity | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044427 | chromosomal part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
BP | GO:0051276 | chromosome organization | IEP | Predicted GO |
BP | GO:0051301 | cell division | IEP | Predicted GO |
MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Predicted GO |
BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
BP | GO:1903047 | mitotic cell cycle process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007125 | Histone_H2A/H2B/H3 | 4 | 123 |
No external refs found! |