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  5. Solyc06g053720

Solyc06g053720


Description : Zinc finger, C2H2 (AHRD V3.3 *** A0A124SAQ3_CYNCS)


Gene families : OG_42_0000024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g053720
Cluster HCCA clusters: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
Bradi1g76570 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Orthogroups_2024-Update
Brara.D02576.1 No alias C2H2 subclass ZFP transcription factor 0.02 Orthogroups_2024-Update
Glyma.02G029100 No alias zinc finger protein 6 0.02 Orthogroups_2024-Update
Glyma.14G110900 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G186000 No alias zinc-finger protein 10 0.03 Orthogroups_2024-Update
LOC_Os07g05900 No alias ZOS7-02 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g48000 No alias ZOS11-11 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
Potri.001G298700 No alias zinc finger protein 7 0.03 Orthogroups_2024-Update
Potri.002G238700 No alias C2H2-like zinc finger protein 0.02 Orthogroups_2024-Update
Potri.004G084100 No alias zinc finger protein 4 0.04 Orthogroups_2024-Update
Seita.9G388200.1 No alias C2H2 subclass ZFP transcription factor 0.04 Orthogroups_2024-Update
Solyc01g005190 No alias Zinc finger family protein (AHRD V3.3 *** U7E2Y1_POPTR) 0.04 Orthogroups_2024-Update
Sopen03g011760 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen05g002280 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen05g005180 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!