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  5. Solyc06g053820

Solyc06g053820


Description : Chloroplast omega-3 fatty acid desaturase (AHRD V3.3 --* Q0GQS4_JATCU)


Gene families : OG_42_0001901 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001901_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g053820
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
172403 No alias Ribosomal protein S19 family protein 0.23 Orthogroups_2024-Update
At1g04270 No alias 40S ribosomal protein S15-1... 0.07 Orthogroups_2024-Update
At5g09510 No alias 40S ribosomal protein S15-4... 0.05 Orthogroups_2024-Update
Bradi1g05340 No alias Ribosomal protein S19 family protein 0.2 Orthogroups_2024-Update
Bradi1g55280 No alias Ribosomal protein S19 family protein 0.11 Orthogroups_2024-Update
Brara.H03058.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Brara.I05501.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.J00241.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.29 Orthogroups_2024-Update
Cre08.g360900 No alias Ribosomal protein S19 family protein 0.22 Orthogroups_2024-Update
Glyma.05G234800 No alias Ribosomal protein S19 family protein 0.1 Orthogroups_2024-Update
Glyma.07G269600 No alias Ribosomal protein S19 family protein 0.1 Orthogroups_2024-Update
Glyma.08G042300 No alias Ribosomal protein S19 family protein 0.08 Orthogroups_2024-Update
Glyma.17G004300 No alias Ribosomal protein S19 family protein 0.15 Orthogroups_2024-Update
HORVU2Hr1G057430.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Kfl00160_0050 kfl00160_0050_v1.1 (p31674|rs15_orysa : 187.0) 40S ribosomal protein S15 -... 0.15 Orthogroups_2024-Update
LOC_Os03g58430 No alias 40S ribosomal protein S15, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g08660 No alias 40S ribosomal protein S15, putative, expressed 0.07 Orthogroups_2024-Update
MA_14543g0010 No alias (p31674|rs15_orysa : 245.0) 40S ribosomal protein S15 -... 0.05 Orthogroups_2024-Update
Mp3g15000.1 No alias component RPS15 of SSU proteome 0.04 Orthogroups_2024-Update
PSME_00033145-RA No alias (p31674|rs15_orysa : 265.0) 40S ribosomal protein S15 -... 0.11 Orthogroups_2024-Update
Potri.005G219700 No alias Ribosomal protein S19 family protein 0.03 Orthogroups_2024-Update
Pp1s13_413V6 No alias 40s ribosomal protein s15 0.16 Orthogroups_2024-Update
Pp1s223_96V6 No alias 40s ribosomal protein s15 0.07 Orthogroups_2024-Update
Pp1s47_42V6 No alias 40s ribosomal protein s15 0.19 Orthogroups_2024-Update
Pp1s91_124V6 No alias 40s ribosomal protein s15 0.19 Orthogroups_2024-Update
Seita.2G059900.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Seita.9G053600.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Sobic.001G054900.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Sobic.002G056200.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
Sopen02g026630 No alias Ribosomal protein S19 0.33 Orthogroups_2024-Update
Sopen06g018940 No alias Ribosomal protein S19 0.32 Orthogroups_2024-Update
Sopen09g032290 No alias Ribosomal protein S19 0.09 Orthogroups_2024-Update
evm.model.contig_651.1 No alias (at5g09500 : 219.0) Ribosomal protein S19 family... 0.29 Orthogroups_2024-Update
evm.model.tig00020830.61 No alias (p31674|rs15_orysa : 236.0) 40S ribosomal protein S15 -... 0.17 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003713 transcription coactivator activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!