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  5. Kfl00003_0540

Kfl00003_0540 (kfl00003_0540_v1.1)


Aliases : kfl00003_0540_v1.1

Description : (at3g59980 : 177.0) Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: tRNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 5867 Blast hits to 5867 proteins in 2108 species: Archae - 266; Bacteria - 4355; Metazoa - 277; Fungi - 157; Plants - 151; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink). & (q9zts1|sym_orysa : 148.0) Probable methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS) - Oryza sativa (Rice) & (reliability: 354.0) & (original description: no original description)


Gene families : OG_42_0002556 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002556_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00003_0540
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
At3g59980 No alias Nucleic acid-binding, OB-fold-like protein... 0.03 Orthogroups_2024-Update
Bradi1g55690 No alias Nucleic acid-binding, OB-fold-like protein 0.1 Orthogroups_2024-Update
Cre01.g046652 No alias Nucleic acid-binding, OB-fold-like protein 0.04 Orthogroups_2024-Update
GRMZM2G021170 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
Glyma.09G227400 No alias Nucleic acid-binding, OB-fold-like protein 0.04 Orthogroups_2024-Update
Glyma.12G009400 No alias Nucleic acid-binding, OB-fold-like protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G066320.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Mp1g24710.1 No alias Probable methionine--tRNA ligase OS=Oryza sativa subsp.... 0.04 Orthogroups_2024-Update
Pp1s129_152V6 No alias F24G16.250; tRNA-binding region domain-containing... 0.03 Orthogroups_2024-Update
Seita.7G045700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g015960 No alias Methionyl-tRNA synthetase, putative (AHRD V3.3 *** B9STA0_RICCO) 0.02 Orthogroups_2024-Update
evm.model.tig00021070.69 No alias (q9zts1|sym_orysa : 164.0) Probable methionyl-tRNA... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004417 hydroxyethylthiazole kinase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0030008 TRAPP complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002547 tRNA-bd_dom 108 204
No external refs found!