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  5. Kfl00024_0290

Kfl00024_0290 (kfl00024_0290_v1.1)


Aliases : kfl00024_0290_v1.1

Description : (at2g47780 : 98.6) Rubber elongation factor protein (REF); CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT3G05500.1); Has 126 Blast hits to 126 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 197.2) & (original description: no original description)


Gene families : OG_42_0001183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00024_0290
Cluster HCCA clusters: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Glyma.11G250500 No alias Rubber elongation factor protein (REF) 0.02 Orthogroups_2024-Update
Glyma.18G006700 No alias Rubber elongation factor protein (REF) 0.02 Orthogroups_2024-Update
HORVU1Hr1G021780.1 No alias lipid droplet-associated factor *(LDAP) 0.03 Orthogroups_2024-Update
HORVU2Hr1G019790.11 No alias lipid droplet-associated factor *(LDAP) 0.03 Orthogroups_2024-Update
LOC_Os07g47510 No alias stress-related protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp4g15940.1 No alias associated factor (LDAP) 0.02 Orthogroups_2024-Update
PSME_00020513-RA No alias (at3g05500 : 161.0) Rubber elongation factor protein... 0.01 Orthogroups_2024-Update
PSME_00038248-RA No alias (at3g05500 : 95.9) Rubber elongation factor protein... 0.01 Orthogroups_2024-Update
PSME_00039672-RA No alias (at3g05500 : 184.0) Rubber elongation factor protein... 0.02 Orthogroups_2024-Update
PSME_00041030-RA No alias (at3g05500 : 173.0) Rubber elongation factor protein... 0.02 Orthogroups_2024-Update
Potri.013G017300 No alias Rubber elongation factor protein (REF) 0.02 Orthogroups_2024-Update
Seita.2G425600.1 No alias lipid droplet-associated factor *(LDAP) 0.02 Orthogroups_2024-Update
Seita.3G036300.1 No alias lipid droplet-associated factor *(LDAP) 0.02 Orthogroups_2024-Update
Sobic.002G412800.1 No alias lipid droplet-associated factor *(LDAP) 0.02 Orthogroups_2024-Update
Sobic.009G046600.2 No alias lipid droplet-associated factor *(LDAP) 0.02 Orthogroups_2024-Update
Solyc05g015390 No alias Rubber elongation factor protein (AHRD V3.3 *** A0A072TUR8_MEDTR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
CC GO:0000145 exocyst IEP Predicted GO
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0032787 monocarboxylic acid metabolic process IEP Predicted GO
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR008802 REF 19 227
No external refs found!