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  5. Kfl00054_0160

Kfl00054_0160 (kfl00054_0160_v1.1)


Aliases : kfl00054_0160_v1.1

Description : (at1g60900 : 445.0) U2 snRNP auxilliary factor, large subunit, splicing factor; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT4G36690.4); Has 95343 Blast hits to 42389 proteins in 1915 species: Archae - 82; Bacteria - 12197; Metazoa - 47091; Fungi - 9469; Plants - 8106; Viruses - 663; Other Eukaryotes - 17735 (source: NCBI BLink). & (reliability: 890.0) & (original description: no original description)


Gene families : OG_42_0001657 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001657_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Klebsormidium release: Kfl00054_0160
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
160385 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 Orthogroups_2024-Update
Bradi4g09940 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.04 Orthogroups_2024-Update
Bradi4g12260 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.03 Orthogroups_2024-Update
PSME_00017573-RA No alias (at4g36690 : 242.0) ATU2AF65A; FUNCTIONS IN: RNA... 0.02 Orthogroups_2024-Update
Potri.005G125500 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 Orthogroups_2024-Update
Pp1s58_254V6 No alias splicing factor-like protein 0.01 Orthogroups_2024-Update
Sobic.005G216300.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 421 481
IPR000504 RRM_dom 271 340
No external refs found!