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  5. Kfl00095_0160

Kfl00095_0160 (kfl00095_0160_v1.1)


Aliases : kfl00095_0160_v1.1

Description : (at3g18390 : 154.0) embryo defective 1865 (EMB1865); FUNCTIONS IN: RNA binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3B (TAIR:AT4G14510.1); Has 1281 Blast hits to 1142 proteins in 135 species: Archae - 11; Bacteria - 10; Metazoa - 285; Fungi - 118; Plants - 447; Viruses - 43; Other Eukaryotes - 367 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description)


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00095_0160
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
At4g29750 No alias CRS1 / YhbY (CRM) domain-containing protein... 0.03 Orthogroups_2024-Update
At5g16180 No alias Chloroplastic group IIA intron splicing facilitator... 0.02 Orthogroups_2024-Update
Bradi2g17390 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Bradi4g14900 No alias CRM family member 3A 0.02 Orthogroups_2024-Update
Bradi5g12660 No alias CRM family member 2 0.02 Orthogroups_2024-Update
Cre14.g630301 No alias CRM family member 2 0.02 Orthogroups_2024-Update
Glyma.07G092300 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
Glyma.09G183900 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.17G054400 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Glyma.19G014000 No alias CRM family member 2 0.02 Orthogroups_2024-Update
Glyma.19G014100 No alias CRM family member 2 0.03 Orthogroups_2024-Update
Glyma.20G205000 No alias CRM family member 3A 0.02 Orthogroups_2024-Update
HORVU2Hr1G081140.18 No alias plastidial RNA splicing factor *(CFM2) 0.03 Orthogroups_2024-Update
LOC_Os04g39060 No alias CRS1/YhbY domain containing protein, expressed 0.01 Orthogroups_2024-Update
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.02 Orthogroups_2024-Update
Potri.010G077100 No alias CRM family member 3A 0.02 Orthogroups_2024-Update
Potri.012G056100 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
Seita.2G185900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.3G156100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G170300.1 No alias plastidial RNA splicing factor *(CFM3) 0.01 Orthogroups_2024-Update
Sobic.006G110200.2 No alias plastidial RNA splicing factor *(CFM2) 0.02 Orthogroups_2024-Update
Sobic.009G223200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g087250 No alias Chloroplastic group IIA intron splicing facilitator... 0.02 Orthogroups_2024-Update
Solyc03g119450 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.02 Orthogroups_2024-Update
Sopen02g031990 No alias CRS1 / YhbY (CRM) domain 0.02 Orthogroups_2024-Update
Sopen07g019080 No alias CRS1 / YhbY (CRM) domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 978 1061
IPR001890 RNA-binding_CRM 426 510
IPR001890 RNA-binding_CRM 610 693
IPR001890 RNA-binding_CRM 1199 1269
No external refs found!