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  5. Kfl00103_0090

Kfl00103_0090 (kfl00103_0090_v1.1,...)


Aliases : kfl00103_0090_v1.1, kfl00103_0090_v1.1

Description : (at1g66170 : 338.0) encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus.; MALE MEIOCYTE DEATH 1 (MMD1); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: microsporogenesis, regulation of transcription, DNA-dependent, male meiosis; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G01810.1); Has 932 Blast hits to 913 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 337; Fungi - 321; Plants - 250; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). & (reliability: 676.0) & (original description: no original description)


Gene families : OG_42_0001013 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001013_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Klebsormidium release: Kfl00103_0090
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Brara.B01641.1 No alias PHD finger transcription factor & meiotic recombination... 0.02 Orthogroups_2024-Update
PSME_00014757-RA No alias (at1g66170 : 397.0) encodes a PHD-domain containing... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003688 DNA replication origin binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009235 cobalamin metabolic process IEP Predicted GO
BP GO:0009236 cobalamin biosynthetic process IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 706 752
No external refs found!