1. Home
  2. Species
  3. Klebsormidium nitens
  4. Sequence
  5. Kfl00106_0020

Kfl00106_0020 (kfl00106_0020_v1.1,...)


Aliases : kfl00106_0020_v1.1, kfl00106_0020_v1.1

Description : (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) - Volvox carteri & (at5g59910 : 163.0) HTB4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00106_0020
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Cre12.g504700 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
MA_10435143g0010 No alias (at5g22880 : 172.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
MA_111473g0010 No alias (at3g46030 : 185.0) HTB11; FUNCTIONS IN: DNA binding;... 0.02 Orthogroups_2024-Update
Sopen06g031190 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predicted GO
BP GO:0006817 phosphate ion transport IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 34 139
No external refs found!