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- Kfl00106_0070
Kfl00106_0070 (kfl00106_0070_v1.1)
Aliases : kfl00106_0070_v1.1
Description : (at5g16715 : 1236.0) embryo defective 2247 (EMB2247); FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl-tRNA synthetase, class Ia, tRNA-binding arm (InterPro:IPR019499), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 40467 Blast hits to 37894 proteins in 3157 species: Archae - 953; Bacteria - 21019; Metazoa - 839; Fungi - 772; Plants - 400; Viruses - 0; Other Eukaryotes - 16484 (source: NCBI BLink). & (reliability: 2472.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Klebsormidium release: Kfl00106_0070 | |
Cluster | HCCA clusters: Cluster_69 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
Bradi1g56890 | No alias | ATP binding;valine-tRNA ligases;aminoacyl-tRNA... | 0.03 | Orthogroups_2024-Update | |
Bradi2g04960 | No alias | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | 0.02 | Orthogroups_2024-Update | |
Brara.I04978.1 | No alias | EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase | 0.02 | Orthogroups_2024-Update | |
Cre12.g537100 | No alias | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | 0.01 | Orthogroups_2024-Update | |
Glyma.17G186800 | No alias | ATP binding;valine-tRNA ligases;aminoacyl-tRNA... | 0.02 | Orthogroups_2024-Update | |
Glyma.17G186900 | No alias | ATP binding;valine-tRNA ligases;aminoacyl-tRNA... | 0.03 | Orthogroups_2024-Update | |
LOC_Os03g02100 | No alias | valyl-tRNA synthetase, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os03g48850 | No alias | valyl-tRNA synthetase, putative, expressed | 0.01 | Orthogroups_2024-Update | |
Potri.017G124500 | No alias | ATP binding;valine-tRNA ligases;aminoacyl-tRNA... | 0.03 | Orthogroups_2024-Update | |
Pp1s70_257V6 | No alias | valyl-trna synthetase | 0.05 | Orthogroups_2024-Update | |
Pp1s84_125V6 | No alias | valyl trna synthetase | 0.02 | Orthogroups_2024-Update | |
Seita.2G041900.1 | No alias | EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase | 0.03 | Orthogroups_2024-Update | |
Sobic.002G042500.1 | No alias | EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase | 0.01 | Orthogroups_2024-Update | |
Sobic.007G054800.1 | No alias | EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase | 0.02 | Orthogroups_2024-Update | |
Sopen12g009300 | No alias | tRNA synthetases class I (I, L, M and V) | 0.01 | Orthogroups_2024-Update | |
evm.model.contig_2016.16 | No alias | (at5g16715 : 936.0) embryo defective 2247 (EMB2247);... | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0000166 | nucleotide binding | IEA | InterProScan predictions |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEA | InterProScan predictions |
MF | GO:0004832 | valine-tRNA ligase activity | IEA | InterProScan predictions |
MF | GO:0005488 | binding | None | Extended |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
CC | GO:0005575 | cellular_component | None | Extended |
CC | GO:0005737 | cytoplasm | IEA | InterProScan predictions |
BP | GO:0006082 | organic acid metabolic process | None | Extended |
BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
BP | GO:0006399 | tRNA metabolic process | None | Extended |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEA | InterProScan predictions |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEA | InterProScan predictions |
BP | GO:0006520 | cellular amino acid metabolic process | None | Extended |
BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
MF | GO:0008144 | drug binding | None | Extended |
BP | GO:0008150 | biological_process | None | Extended |
BP | GO:0008152 | metabolic process | None | Extended |
BP | GO:0009987 | cellular process | None | Extended |
BP | GO:0016070 | RNA metabolic process | None | Extended |
MF | GO:0016874 | ligase activity | None | Extended |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | None | Extended |
MF | GO:0017076 | purine nucleotide binding | None | Extended |
BP | GO:0019752 | carboxylic acid metabolic process | None | Extended |
MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
MF | GO:0032553 | ribonucleotide binding | None | Extended |
MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
BP | GO:0034660 | ncRNA metabolic process | None | Extended |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
MF | GO:0036094 | small molecule binding | None | Extended |
BP | GO:0043038 | amino acid activation | None | Extended |
BP | GO:0043039 | tRNA aminoacylation | None | Extended |
MF | GO:0043167 | ion binding | None | Extended |
MF | GO:0043168 | anion binding | None | Extended |
BP | GO:0043170 | macromolecule metabolic process | None | Extended |
BP | GO:0043436 | oxoacid metabolic process | None | Extended |
BP | GO:0044237 | cellular metabolic process | None | Extended |
BP | GO:0044238 | primary metabolic process | None | Extended |
BP | GO:0044281 | small molecule metabolic process | None | Extended |
CC | GO:0044424 | intracellular part | None | Extended |
CC | GO:0044464 | cell part | None | Extended |
BP | GO:0046483 | heterocycle metabolic process | None | Extended |
BP | GO:0071704 | organic substance metabolic process | None | Extended |
BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
MF | GO:0140098 | catalytic activity, acting on RNA | None | Extended |
MF | GO:0140101 | catalytic activity, acting on a tRNA | None | Extended |
MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
BP | GO:1901564 | organonitrogen compound metabolic process | None | Extended |
Type | GO Term | Name | Evidence | Source |
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Predicted GO |
MF | GO:0003689 | DNA clamp loader activity | IEP | Predicted GO |
MF | GO:0003855 | 3-dehydroquinate dehydratase activity | IEP | Predicted GO |
MF | GO:0004470 | malic enzyme activity | IEP | Predicted GO |
MF | GO:0004471 | malate dehydrogenase (decarboxylating) (NAD+) activity | IEP | Predicted GO |
MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
MF | GO:0004519 | endonuclease activity | IEP | Predicted GO |
MF | GO:0004540 | ribonuclease activity | IEP | Predicted GO |
MF | GO:0004764 | shikimate 3-dehydrogenase (NADP+) activity | IEP | Predicted GO |
MF | GO:0004820 | glycine-tRNA ligase activity | IEP | Predicted GO |
CC | GO:0005663 | DNA replication factor C complex | IEP | Predicted GO |
BP | GO:0006302 | double-strand break repair | IEP | Predicted GO |
BP | GO:0006426 | glycyl-tRNA aminoacylation | IEP | Predicted GO |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Predicted GO |
MF | GO:0016615 | malate dehydrogenase activity | IEP | Predicted GO |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
MF | GO:0030145 | manganese ion binding | IEP | Predicted GO |
MF | GO:0033170 | protein-DNA loading ATPase activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
IPR002300 | aa-tRNA-synth_Ia | 121 | 680 |
IPR019499 | Val-tRNA_synth_tRNA-bd | 946 | 1010 |
IPR013155 | M/V/L/I-tRNA-synth_anticd-bd | 735 | 880 |