Coexpression cluster: Cluster_69 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140101 catalytic activity, acting on a tRNA 4.17% (9/216) 3.74 0.0 8e-06
GO:0016070 RNA metabolic process 7.41% (16/216) 2.32 0.0 3.1e-05
GO:0140098 catalytic activity, acting on RNA 5.09% (11/216) 2.73 1e-06 0.00012
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.78% (6/216) 3.7 6e-06 0.000301
GO:0043038 amino acid activation 2.78% (6/216) 3.7 6e-06 0.000301
GO:0043039 tRNA aminoacylation 2.78% (6/216) 3.7 6e-06 0.000301
GO:0004812 aminoacyl-tRNA ligase activity 2.78% (6/216) 3.7 6e-06 0.000301
GO:0006418 tRNA aminoacylation for protein translation 2.78% (6/216) 3.82 4e-06 0.000359
GO:0006399 tRNA metabolic process 3.24% (7/216) 3.18 1.2e-05 0.000367
GO:0034641 cellular nitrogen compound metabolic process 12.04% (26/216) 1.35 1.1e-05 0.000374
GO:0034660 ncRNA metabolic process 3.7% (8/216) 2.91 1.1e-05 0.000403
GO:1901360 organic cyclic compound metabolic process 10.65% (23/216) 1.44 1.4e-05 0.000406
GO:0005488 binding 29.63% (64/216) 0.74 1.1e-05 0.000437
GO:0046483 heterocycle metabolic process 10.65% (23/216) 1.47 1e-05 0.000442
GO:0002161 aminoacyl-tRNA editing activity 1.39% (3/216) 5.59 1.9e-05 0.000447
GO:1901363 heterocyclic compound binding 19.91% (43/216) 0.95 1.8e-05 0.000464
GO:0097159 organic cyclic compound binding 19.91% (43/216) 0.95 1.8e-05 0.000464
GO:0090304 nucleic acid metabolic process 8.8% (19/216) 1.57 2.5e-05 0.000561
GO:0006725 cellular aromatic compound metabolic process 10.19% (22/216) 1.4 3.2e-05 0.000646
GO:0006139 nucleobase-containing compound metabolic process 9.72% (21/216) 1.45 3.1e-05 0.000655
GO:0009987 cellular process 20.83% (45/216) 0.88 3.6e-05 0.00069
GO:0016874 ligase activity 3.24% (7/216) 2.81 6.3e-05 0.001158
GO:0006520 cellular amino acid metabolic process 3.24% (7/216) 2.72 9.3e-05 0.001633
GO:0003723 RNA binding 4.63% (10/216) 2.14 0.0001 0.001669
GO:0003674 molecular_function 40.74% (88/216) 0.44 0.000519 0.008026
GO:0052689 carboxylic ester hydrolase activity 1.39% (3/216) 4.21 0.000502 0.008071
GO:0044237 cellular metabolic process 16.2% (35/216) 0.81 0.000713 0.010616
GO:0003676 nucleic acid binding 10.19% (22/216) 1.08 0.000796 0.011426
GO:0044424 intracellular part 8.8% (19/216) 1.14 0.001129 0.01565
GO:0000166 nucleotide binding 11.57% (25/216) 0.94 0.001349 0.016944
GO:1901265 nucleoside phosphate binding 11.57% (25/216) 0.94 0.001349 0.016944
GO:0044281 small molecule metabolic process 4.63% (10/216) 1.67 0.001303 0.017462
GO:0019752 carboxylic acid metabolic process 3.24% (7/216) 2.01 0.001833 0.022325
GO:0044464 cell part 8.8% (19/216) 1.05 0.002178 0.02432
GO:0006082 organic acid metabolic process 3.24% (7/216) 1.96 0.00224 0.024335
GO:0003743 translation initiation factor activity 1.39% (3/216) 3.51 0.002168 0.024905
GO:0035639 purine ribonucleoside triphosphate binding 10.19% (22/216) 0.95 0.002398 0.02537
GO:0043436 oxoacid metabolic process 3.24% (7/216) 1.97 0.002153 0.025459
GO:0036094 small molecule binding 11.57% (25/216) 0.87 0.002634 0.027151
GO:0032555 purine ribonucleotide binding 10.19% (22/216) 0.93 0.002739 0.027527
GO:0005524 ATP binding 9.26% (20/216) 0.98 0.00289 0.027663
GO:0017076 purine nucleotide binding 10.19% (22/216) 0.93 0.002886 0.0283
GO:0006807 nitrogen compound metabolic process 14.35% (31/216) 0.73 0.003451 0.028904
GO:0032553 ribonucleotide binding 10.19% (22/216) 0.91 0.003243 0.028967
GO:0032559 adenyl ribonucleotide binding 9.26% (20/216) 0.97 0.00332 0.029014
GO:0030554 adenyl nucleotide binding 9.26% (20/216) 0.96 0.003412 0.029185
GO:0097367 carbohydrate derivative binding 10.19% (22/216) 0.9 0.00359 0.029449
GO:0005737 cytoplasm 1.85% (4/216) 2.71 0.003238 0.029584
GO:0043168 anion binding 11.11% (24/216) 0.87 0.003237 0.030265
GO:0008312 7S RNA binding 0.93% (2/216) 4.32 0.004143 0.032655
GO:0048500 signal recognition particle 0.93% (2/216) 4.32 0.004143 0.032655
GO:0043170 macromolecule metabolic process 12.5% (27/216) 0.75 0.005412 0.041843
GO:0008144 drug binding 9.26% (20/216) 0.9 0.005612 0.042569
GO:0006613 cotranslational protein targeting to membrane 0.93% (2/216) 4.0 0.006549 0.045393
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 0.93% (2/216) 4.0 0.006549 0.045393
GO:0072657 protein localization to membrane 0.93% (2/216) 4.0 0.006549 0.045393
GO:0090150 establishment of protein localization to membrane 0.93% (2/216) 4.0 0.006549 0.045393
GO:0006612 protein targeting to membrane 0.93% (2/216) 4.0 0.006549 0.045393
GO:0008135 translation factor activity, RNA binding 1.39% (3/216) 2.91 0.007311 0.049816
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_26 0.021 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_43 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_29 0.021 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_71 0.029 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_110 0.021 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_66 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_95 0.021 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_12 0.033 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_26 0.034 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_15 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_37 0.025 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_137 0.033 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_45 0.02 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_18 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_59 0.027 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_71 0.024 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_132 0.027 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_212 0.023 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_289 0.025 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_73 0.022 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0009 0.028 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0036 0.025 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0070 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_32 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_66 0.024 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_212 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_286 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_28 0.023 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_45 0.021 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_204 0.02 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_66 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_164 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_3 0.035 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_33 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_34 0.027 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_45 0.025 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_56 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_108 0.024 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_122 0.022 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_81 0.025 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_104 0.02 Orthogroups_2024-Update Compare
Sequences (216) (download table)

InterPro Domains

GO Terms

Family Terms