Coexpression cluster: Cluster_12 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006082 organic acid metabolic process 8.98% (15/167) 3.54 0.0 0.0
GO:0043436 oxoacid metabolic process 8.98% (15/167) 3.54 0.0 0.0
GO:0019752 carboxylic acid metabolic process 8.98% (15/167) 3.56 0.0 0.0
GO:0043039 tRNA aminoacylation 5.39% (9/167) 4.65 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 5.39% (9/167) 4.65 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 5.39% (9/167) 4.65 0.0 0.0
GO:0043038 amino acid activation 5.39% (9/167) 4.65 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 5.99% (10/167) 4.15 0.0 0.0
GO:0006520 cellular amino acid metabolic process 6.59% (11/167) 3.8 0.0 0.0
GO:0033014 tetrapyrrole biosynthetic process 3.59% (6/167) 5.07 0.0 1e-06
GO:0006399 tRNA metabolic process 5.39% (9/167) 3.81 0.0 1e-06
GO:0006418 tRNA aminoacylation for protein translation 4.19% (7/167) 4.45 0.0 1e-06
GO:0033013 tetrapyrrole metabolic process 3.59% (6/167) 4.86 0.0 1e-06
GO:0016830 carbon-carbon lyase activity 3.59% (6/167) 4.79 0.0 2e-06
GO:0016874 ligase activity 5.39% (9/167) 3.58 0.0 2e-06
GO:0034660 ncRNA metabolic process 5.39% (9/167) 3.41 0.0 4e-06
GO:0140098 catalytic activity, acting on RNA 5.99% (10/167) 3.17 0.0 4e-06
GO:0051186 cofactor metabolic process 4.79% (8/167) 3.64 0.0 5e-06
GO:0016831 carboxy-lyase activity 2.99% (5/167) 5.05 0.0 6e-06
GO:0006779 porphyrin-containing compound biosynthetic process 2.4% (4/167) 5.73 1e-06 1e-05
GO:0051188 cofactor biosynthetic process 4.19% (7/167) 3.78 1e-06 1.3e-05
GO:0004853 uroporphyrinogen decarboxylase activity 1.8% (3/167) 6.73 1e-06 1.4e-05
GO:0044281 small molecule metabolic process 8.98% (15/167) 2.2 1e-06 1.7e-05
GO:0006778 porphyrin-containing compound metabolic process 2.4% (4/167) 5.41 2e-06 2.4e-05
GO:0006725 cellular aromatic compound metabolic process 11.38% (19/167) 1.73 5e-06 7.2e-05
GO:1901360 organic cyclic compound metabolic process 11.38% (19/167) 1.7 7e-06 9.4e-05
GO:0003824 catalytic activity 29.34% (49/167) 0.9 7e-06 9.7e-05
GO:0046483 heterocycle metabolic process 10.78% (18/167) 1.65 1.8e-05 0.000245
GO:0016829 lyase activity 5.39% (9/167) 2.46 4.1e-05 0.000531
GO:0008152 metabolic process 25.15% (42/167) 0.85 8e-05 0.001014
GO:0048037 cofactor binding 6.59% (11/167) 1.99 0.00011 0.001348
GO:0003674 molecular_function 41.32% (69/167) 0.56 0.000128 0.001521
GO:1901566 organonitrogen compound biosynthetic process 5.99% (10/167) 2.07 0.000145 0.001673
GO:0043167 ion binding 17.37% (29/167) 1.04 0.000153 0.001712
GO:0034641 cellular nitrogen compound metabolic process 10.78% (18/167) 1.38 0.000207 0.002246
GO:0019438 aromatic compound biosynthetic process 5.99% (10/167) 1.99 0.000231 0.002443
GO:0015031 protein transport 2.99% (5/167) 3.01 0.000391 0.003381
GO:0042886 amide transport 2.99% (5/167) 3.01 0.000391 0.003381
GO:0045184 establishment of protein localization 2.99% (5/167) 3.01 0.000391 0.003381
GO:0015833 peptide transport 2.99% (5/167) 3.01 0.000391 0.003381
GO:0008104 protein localization 2.99% (5/167) 2.99 0.00042 0.003468
GO:0033036 macromolecule localization 2.99% (5/167) 2.99 0.00042 0.003468
GO:0009058 biosynthetic process 8.98% (15/167) 1.48 0.00034 0.003491
GO:0016491 oxidoreductase activity 7.78% (13/167) 1.61 0.000351 0.003509
GO:1901362 organic cyclic compound biosynthetic process 5.99% (10/167) 1.89 0.000388 0.003685
GO:0016070 RNA metabolic process 5.39% (9/167) 2.03 0.000382 0.003719
GO:0008150 biological_process 29.34% (49/167) 0.65 0.000574 0.004643
GO:0019842 vitamin binding 2.4% (4/167) 3.34 0.000642 0.005079
GO:0016835 carbon-oxygen lyase activity 1.8% (3/167) 4.07 0.000711 0.005401
GO:0036094 small molecule binding 13.77% (23/167) 1.05 0.000705 0.005467
GO:1901564 organonitrogen compound metabolic process 14.37% (24/167) 1.01 0.000791 0.005897
GO:0050662 coenzyme binding 4.19% (7/167) 2.19 0.0009 0.006578
GO:0043168 anion binding 13.17% (22/167) 1.05 0.000953 0.00683
GO:0071702 organic substance transport 2.99% (5/167) 2.68 0.001119 0.007872
GO:0018130 heterocycle biosynthetic process 5.39% (9/167) 1.8 0.001206 0.00833
GO:0008565 protein transporter activity 1.2% (2/167) 5.15 0.001289 0.008747
GO:0071705 nitrogen compound transport 2.99% (5/167) 2.58 0.001529 0.010191
GO:0072657 protein localization to membrane 1.2% (2/167) 4.73 0.002376 0.013478
GO:0072599 establishment of protein localization to endoplasmic reticulum 1.2% (2/167) 4.73 0.002376 0.013478
GO:0006720 isoprenoid metabolic process 1.2% (2/167) 4.73 0.002376 0.013478
GO:0090150 establishment of protein localization to membrane 1.2% (2/167) 4.73 0.002376 0.013478
GO:0008299 isoprenoid biosynthetic process 1.2% (2/167) 4.73 0.002376 0.013478
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 1.2% (2/167) 4.73 0.002376 0.013478
GO:0045047 protein targeting to ER 1.2% (2/167) 4.73 0.002376 0.013478
GO:0006613 cotranslational protein targeting to membrane 1.2% (2/167) 4.73 0.002376 0.013478
GO:0006612 protein targeting to membrane 1.2% (2/167) 4.73 0.002376 0.013478
GO:0070972 protein localization to endoplasmic reticulum 1.2% (2/167) 4.73 0.002376 0.013478
GO:0055114 oxidation-reduction process 6.59% (11/167) 1.45 0.002474 0.013828
GO:0016053 organic acid biosynthetic process 2.4% (4/167) 2.75 0.00293 0.015907
GO:0046394 carboxylic acid biosynthetic process 2.4% (4/167) 2.75 0.00293 0.015907
GO:0000049 tRNA binding 1.2% (2/167) 4.56 0.003037 0.016026
GO:0006605 protein targeting 1.2% (2/167) 4.56 0.003037 0.016026
GO:0044249 cellular biosynthetic process 7.19% (12/167) 1.33 0.003177 0.016536
GO:0009055 electron transfer activity 1.8% (3/167) 3.27 0.003633 0.018166
GO:0030170 pyridoxal phosphate binding 1.8% (3/167) 3.27 0.003633 0.018166
GO:0070279 vitamin B6 binding 1.8% (3/167) 3.27 0.003633 0.018166
GO:0044237 cellular metabolic process 16.77% (28/167) 0.76 0.00395 0.019493
GO:1901576 organic substance biosynthetic process 7.19% (12/167) 1.27 0.004256 0.020736
GO:0009987 cellular process 18.56% (31/167) 0.69 0.004715 0.021587
GO:0097159 organic cyclic compound binding 16.77% (28/167) 0.74 0.00469 0.021733
GO:1901363 heterocyclic compound binding 16.77% (28/167) 0.74 0.00469 0.021733
GO:0033365 protein localization to organelle 1.2% (2/167) 4.27 0.004582 0.021765
GO:0072594 establishment of protein localization to organelle 1.2% (2/167) 4.27 0.004582 0.021765
GO:0003723 RNA binding 3.59% (6/167) 1.93 0.005041 0.022802
GO:0034613 cellular protein localization 1.2% (2/167) 4.15 0.005465 0.024146
GO:0070727 cellular macromolecule localization 1.2% (2/167) 4.15 0.005465 0.024146
GO:0009108 coenzyme biosynthetic process 1.8% (3/167) 3.03 0.00584 0.02522
GO:0090304 nucleic acid metabolic process 5.39% (9/167) 1.46 0.005785 0.025267
GO:0006732 coenzyme metabolic process 1.8% (3/167) 2.92 0.007187 0.030687
GO:0019898 extrinsic component of membrane 1.2% (2/167) 3.92 0.007442 0.031422
GO:0031414 N-terminal protein acetyltransferase complex 0.6% (1/167) 6.73 0.009414 0.033122
GO:0004107 chorismate synthase activity 0.6% (1/167) 6.73 0.009414 0.033122
GO:0004655 porphobilinogen synthase activity 0.6% (1/167) 6.73 0.009414 0.033122
GO:0070402 NADPH binding 0.6% (1/167) 6.73 0.009414 0.033122
GO:0018206 peptidyl-methionine modification 0.6% (1/167) 6.73 0.009414 0.033122
GO:0017196 N-terminal peptidyl-methionine acetylation 0.6% (1/167) 6.73 0.009414 0.033122
GO:0006474 N-terminal protein amino acid acetylation 0.6% (1/167) 6.73 0.009414 0.033122
GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor 0.6% (1/167) 6.73 0.009414 0.033122
GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity 0.6% (1/167) 6.73 0.009414 0.033122
GO:0031417 NatC complex 0.6% (1/167) 6.73 0.009414 0.033122
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity 0.6% (1/167) 6.73 0.009414 0.033122
GO:0003855 3-dehydroquinate dehydratase activity 0.6% (1/167) 6.73 0.009414 0.033122
GO:0006426 glycyl-tRNA aminoacylation 0.6% (1/167) 6.73 0.009414 0.033122
GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity 0.6% (1/167) 6.73 0.009414 0.033122
GO:0004820 glycine-tRNA ligase activity 0.6% (1/167) 6.73 0.009414 0.033122
GO:0000166 nucleotide binding 11.38% (19/167) 0.84 0.009813 0.033901
GO:1901265 nucleoside phosphate binding 11.38% (19/167) 0.84 0.009813 0.033901
GO:0006757 ATP generation from ADP 1.2% (2/167) 3.64 0.010919 0.034009
GO:0006165 nucleoside diphosphate phosphorylation 1.2% (2/167) 3.64 0.010919 0.034009
GO:0046031 ADP metabolic process 1.2% (2/167) 3.64 0.010919 0.034009
GO:0009132 nucleoside diphosphate metabolic process 1.2% (2/167) 3.64 0.010919 0.034009
GO:0009135 purine nucleoside diphosphate metabolic process 1.2% (2/167) 3.64 0.010919 0.034009
GO:0046939 nucleotide phosphorylation 1.2% (2/167) 3.64 0.010919 0.034009
GO:0006096 glycolytic process 1.2% (2/167) 3.64 0.010919 0.034009
GO:0016836 hydro-lyase activity 1.2% (2/167) 3.64 0.010919 0.034009
GO:0009179 purine ribonucleoside diphosphate metabolic process 1.2% (2/167) 3.64 0.010919 0.034009
GO:0042866 pyruvate biosynthetic process 1.2% (2/167) 3.64 0.010919 0.034009
GO:0009654 photosystem II oxygen evolving complex 1.2% (2/167) 3.64 0.010919 0.034009
GO:0009185 ribonucleoside diphosphate metabolic process 1.2% (2/167) 3.64 0.010919 0.034009
GO:0005488 binding 23.95% (40/167) 0.54 0.008186 0.034184
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 1.2% (2/167) 3.82 0.008534 0.03525
GO:0044283 small molecule biosynthetic process 2.4% (4/167) 2.18 0.011991 0.037046
GO:0000287 magnesium ion binding 1.2% (2/167) 3.56 0.012208 0.037113
GO:0006090 pyruvate metabolic process 1.2% (2/167) 3.56 0.012208 0.037113
GO:0005737 cytoplasm 1.8% (3/167) 2.79 0.009247 0.037785
GO:0044271 cellular nitrogen compound biosynthetic process 5.39% (9/167) 1.27 0.013031 0.039301
GO:0009523 photosystem II 1.2% (2/167) 3.48 0.013561 0.040576
GO:0031365 N-terminal protein amino acid modification 0.6% (1/167) 5.73 0.018739 0.048442
GO:0009396 folic acid-containing compound biosynthetic process 0.6% (1/167) 5.73 0.018739 0.048442
GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors 0.6% (1/167) 5.73 0.018739 0.048442
GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor 0.6% (1/167) 5.73 0.018739 0.048442
GO:0098809 nitrite reductase activity 0.6% (1/167) 5.73 0.018739 0.048442
GO:0004827 proline-tRNA ligase activity 0.6% (1/167) 5.73 0.018739 0.048442
GO:0008942 nitrite reductase [NAD(P)H] activity 0.6% (1/167) 5.73 0.018739 0.048442
GO:0004109 coproporphyrinogen oxidase activity 0.6% (1/167) 5.73 0.018739 0.048442
GO:0016838 carbon-oxygen lyase activity, acting on phosphates 0.6% (1/167) 5.73 0.018739 0.048442
GO:0004425 indole-3-glycerol-phosphate synthase activity 0.6% (1/167) 5.73 0.018739 0.048442
GO:0004418 hydroxymethylbilane synthase activity 0.6% (1/167) 5.73 0.018739 0.048442
GO:0006433 prolyl-tRNA aminoacylation 0.6% (1/167) 5.73 0.018739 0.048442
GO:0017144 drug metabolic process 1.8% (3/167) 2.41 0.018952 0.04866
GO:0009166 nucleotide catabolic process 1.2% (2/167) 3.34 0.01645 0.048837
GO:0004222 metalloendopeptidase activity 1.2% (2/167) 3.21 0.019577 0.048943
GO:0019362 pyridine nucleotide metabolic process 1.2% (2/167) 3.21 0.019577 0.048943
GO:0046496 nicotinamide nucleotide metabolic process 1.2% (2/167) 3.21 0.019577 0.048943
GO:0072525 pyridine-containing compound biosynthetic process 1.2% (2/167) 3.21 0.019577 0.048943
GO:0006139 nucleobase-containing compound metabolic process 6.59% (11/167) 1.06 0.016896 0.04977
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_1 0.026 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_12 0.023 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_43 0.061 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_76 0.032 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_129 0.021 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_37 0.038 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_57 0.022 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_71 0.06 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_243 0.027 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_18 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_20 0.023 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_43 0.035 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_52 0.036 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_61 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_69 0.033 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_23 0.036 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_80 0.031 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_37 0.048 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_63 0.05 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_137 0.049 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_141 0.023 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_164 0.023 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_174 0.024 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_5 0.02 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_46 0.034 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_73 0.038 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_67 0.026 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_210 0.028 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_47 0.024 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_208 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_41 0.043 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_71 0.072 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_88 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_121 0.032 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_132 0.035 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_160 0.025 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_187 0.033 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_260 0.026 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_320 0.023 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_338 0.025 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_384 0.023 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_409 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_441 0.051 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_23 0.064 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_90 0.025 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_56 0.025 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_107 0.023 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_158 0.02 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0048 0.022 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0086 0.025 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0112 0.026 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0030 0.031 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0050 0.059 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_23 0.041 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_57 0.046 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_66 0.033 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_118 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_133 0.027 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_178 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_45 0.024 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_101 0.031 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_193 0.021 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_204 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_249 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_6 0.073 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_63 0.042 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_146 0.041 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_211 0.035 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_3 0.058 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_33 0.037 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_34 0.037 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_69 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_161 0.038 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_163 0.036 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_5 0.034 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_19 0.036 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_63 0.026 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_81 0.035 Orthogroups_2024-Update Compare
Sequences (167) (download table)

InterPro Domains

GO Terms

Family Terms