Description : Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G80170.1)
Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc06g068040 | |
Cluster | HCCA clusters: Cluster_49 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Sopen09g036200 | No alias | Glycosyl hydrolases family 28 | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004650 | polygalacturonase activity | IEA | InterProScan predictions |
BP | GO:0005975 | carbohydrate metabolic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000151 | ubiquitin ligase complex | IEP | Predicted GO |
CC | GO:0000781 | chromosome, telomeric region | IEP | Predicted GO |
CC | GO:0000784 | nuclear chromosome, telomeric region | IEP | Predicted GO |
MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predicted GO |
MF | GO:0004451 | isocitrate lyase activity | IEP | Predicted GO |
CC | GO:0005875 | microtubule associated complex | IEP | Predicted GO |
BP | GO:0006022 | aminoglycan metabolic process | IEP | Predicted GO |
BP | GO:0006023 | aminoglycan biosynthetic process | IEP | Predicted GO |
BP | GO:0006024 | glycosaminoglycan biosynthetic process | IEP | Predicted GO |
BP | GO:0006029 | proteoglycan metabolic process | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006787 | porphyrin-containing compound catabolic process | IEP | Predicted GO |
BP | GO:0009056 | catabolic process | IEP | Predicted GO |
BP | GO:0009100 | glycoprotein metabolic process | IEP | Predicted GO |
BP | GO:0009101 | glycoprotein biosynthetic process | IEP | Predicted GO |
BP | GO:0015012 | heparan sulfate proteoglycan biosynthetic process | IEP | Predicted GO |
BP | GO:0015994 | chlorophyll metabolic process | IEP | Predicted GO |
BP | GO:0015996 | chlorophyll catabolic process | IEP | Predicted GO |
MF | GO:0016833 | oxo-acid-lyase activity | IEP | Predicted GO |
BP | GO:0030166 | proteoglycan biosynthetic process | IEP | Predicted GO |
BP | GO:0030201 | heparan sulfate proteoglycan metabolic process | IEP | Predicted GO |
BP | GO:0030203 | glycosaminoglycan metabolic process | IEP | Predicted GO |
CC | GO:0030286 | dynein complex | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033015 | tetrapyrrole catabolic process | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
MF | GO:0034450 | ubiquitin-ubiquitin ligase activity | IEP | Predicted GO |
MF | GO:0042162 | telomeric DNA binding | IEP | Predicted GO |
MF | GO:0042393 | histone binding | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
MF | GO:0043047 | single-stranded telomeric DNA binding | IEP | Predicted GO |
BP | GO:0044248 | cellular catabolic process | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
BP | GO:0046149 | pigment catabolic process | IEP | Predicted GO |
MF | GO:0047746 | chlorophyllase activity | IEP | Predicted GO |
BP | GO:0051187 | cofactor catabolic process | IEP | Predicted GO |
MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predicted GO |
MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predicted GO |
CC | GO:0098687 | chromosomal region | IEP | Predicted GO |
MF | GO:0098847 | sequence-specific single stranded DNA binding | IEP | Predicted GO |
BP | GO:1901575 | organic substance catabolic process | IEP | Predicted GO |
CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000743 | Glyco_hydro_28 | 76 | 399 |
No external refs found! |