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Description : 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR)
Gene families : OG_42_0001114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001114_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc06g068400 | |
| Cluster | HCCA clusters: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 103994 | No alias | Ribosomal protein L30/L7 family protein | 0.05 | Orthogroups_2024-Update | |
| A4A49_32887 | No alias | 60s ribosomal protein l7-1 | 0.04 | Orthogroups_2024-Update | |
| A4A49_59282 | No alias | 60s ribosomal protein l7-2 | 0.02 | Orthogroups_2024-Update | |
| AC190609.3_FG003 | No alias | Ribosomal protein L30/L7 family protein | 0.02 | Orthogroups_2024-Update | |
| At1g80750 | No alias | 60S ribosomal protein L7-1... | 0.07 | Orthogroups_2024-Update | |
| At2g01250 | No alias | 60S ribosomal protein L7-2... | 0.02 | Orthogroups_2024-Update | |
| At3g13580 | No alias | Ribosomal protein L30/L7 family protein... | 0.05 | Orthogroups_2024-Update | |
| Bradi1g04950 | No alias | Ribosomal protein L30/L7 family protein | 0.08 | Orthogroups_2024-Update | |
| Bradi5g20900 | No alias | Ribosomal protein L30/L7 family protein | 0.07 | Orthogroups_2024-Update | |
| Brara.B03026.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
| Brara.D02679.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.11 | Orthogroups_2024-Update | |
| Brara.F03496.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Brara.G02051.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Brara.I02011.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Cre12.g537800 | No alias | Ribosomal protein L30/L7 family protein | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G100225 | No alias | Ribosomal protein L30/L7 family protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G107336 | No alias | Ribosomal protein L30/L7 family protein | 0.04 | Orthogroups_2024-Update | |
| GRMZM5G868433 | No alias | Ribosomal protein L30/L7 family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G020000 | No alias | Ribosomal protein L30/L7 family protein | 0.08 | Orthogroups_2024-Update | |
| Glyma.08G222100 | No alias | Ribosomal protein L30/L7 family protein | 0.1 | Orthogroups_2024-Update | |
| Glyma.09G061000 | No alias | Ribosomal protein L30/L7 family protein | 0.06 | Orthogroups_2024-Update | |
| Glyma.15G167400 | No alias | Ribosomal protein L30/L7 family protein | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G108990.2 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Kfl00380_0050 | kfl00380_0050_v1.1 | (at2g01250 : 349.0) Ribosomal protein L30/L7 family... | 0.04 | Orthogroups_2024-Update | |
| LOC_Os08g42920 | No alias | 60S ribosomal protein L7, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_109845g0010 | No alias | (at2g01250 : 278.0) Ribosomal protein L30/L7 family... | 0.03 | Orthogroups_2024-Update | |
| MA_47548g0010 | No alias | (at2g01250 : 324.0) Ribosomal protein L30/L7 family... | 0.07 | Orthogroups_2024-Update | |
| Mp3g13040.1 | No alias | component RPL7 of LSU proteome component | 0.09 | Orthogroups_2024-Update | |
| PSME_00040767-RA | No alias | (at2g01250 : 333.0) Ribosomal protein L30/L7 family... | 0.04 | Orthogroups_2024-Update | |
| PSME_00042409-RA | No alias | (at2g01250 : 328.0) Ribosomal protein L30/L7 family... | 0.04 | Orthogroups_2024-Update | |
| Potri.006G073200 | No alias | Ribosomal protein L30/L7 family protein | 0.06 | Orthogroups_2024-Update | |
| Potri.008G008000 | No alias | Ribosomal protein L30/L7 family protein | 0.06 | Orthogroups_2024-Update | |
| Potri.018G140300 | No alias | Ribosomal protein L30/L7 family protein | 0.05 | Orthogroups_2024-Update | |
| Pp1s243_40V6 | No alias | 60s ribosomal protein l7-2 | 0.08 | Orthogroups_2024-Update | |
| Pp1s28_10V6 | No alias | 60s ribosomal protein l7-2 | 0.02 | Orthogroups_2024-Update | |
| Pp1s7_369V6 | No alias | 60s ribosomal protein l7-2 | 0.06 | Orthogroups_2024-Update | |
| Seita.1G117100.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Seita.6G017200.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Seita.6G231500.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.11 | Orthogroups_2024-Update | |
| Seita.7G228400.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Sobic.007G085001.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Sobic.007G184400.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
| Sopen07g004260 | No alias | Ribosomal L30 N-terminal domain | 0.13 | Orthogroups_2024-Update | |
| Sopen08g023720 | No alias | Ribosomal L30 N-terminal domain | 0.14 | Orthogroups_2024-Update | |
| Sopen12g032080 | No alias | Ribosomal L30 N-terminal domain | 0.13 | Orthogroups_2024-Update | |
| evm.model.contig_2085.3 | No alias | (at3g13580 : 237.0) Ribosomal protein L30/L7 family... | 0.11 | Orthogroups_2024-Update | |
| evm.model.tig00020909.42 | No alias | (at2g44120 : 205.0) Ribosomal protein L30/L7 family... | 0.09 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005515 | protein binding | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006417 | regulation of translation | IEP | Predicted GO |
| BP | GO:0006448 | regulation of translational elongation | IEP | Predicted GO |
| BP | GO:0006449 | regulation of translational termination | IEP | Predicted GO |
| BP | GO:0006452 | translational frameshifting | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predicted GO |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Predicted GO |
| BP | GO:0010628 | positive regulation of gene expression | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Predicted GO |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Predicted GO |
| MF | GO:0031369 | translation initiation factor binding | IEP | Predicted GO |
| BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0032270 | positive regulation of cellular protein metabolic process | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0034250 | positive regulation of cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predicted GO |
| MF | GO:0043022 | ribosome binding | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043243 | positive regulation of protein complex disassembly | IEP | Predicted GO |
| BP | GO:0043244 | regulation of protein complex disassembly | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| MF | GO:0044877 | protein-containing complex binding | IEP | Predicted GO |
| BP | GO:0045727 | positive regulation of translation | IEP | Predicted GO |
| BP | GO:0045901 | positive regulation of translational elongation | IEP | Predicted GO |
| BP | GO:0045905 | positive regulation of translational termination | IEP | Predicted GO |
| BP | GO:0048518 | positive regulation of biological process | IEP | Predicted GO |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Predicted GO |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Predicted GO |
| BP | GO:0051130 | positive regulation of cellular component organization | IEP | Predicted GO |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Predicted GO |
| BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| No external refs found! |