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  5. Kfl00201_0030

Kfl00201_0030 (kfl00201_0030_v1.1,...)


Aliases : kfl00201_0030_v1.1, kfl00201_0030_v1.1, kfl00201_0030_v1.1

Description : (at3g01610 : 296.0) AAA-type ATPase - Over 90% homologous to CDC48a; cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink). & (q96372|cdc48_capan : 287.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 572.0) & (original description: no original description)


Gene families : OG_42_0000328 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00201_0030
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Bradi1g51940 No alias cell division cycle 48C 0.03 Orthogroups_2024-Update
Cre09.g398550 No alias cell division cycle 48C 0.04 Orthogroups_2024-Update
GRMZM2G315264 No alias Cam interacting protein 111 0.02 Orthogroups_2024-Update
Glyma.13G143600 No alias ATPase, AAA-type, CDC48 protein 0.02 Orthogroups_2024-Update
Potri.013G151600 No alias cell division cycle 48C 0.02 Orthogroups_2024-Update
Pp1s115_6V6 No alias transitional endoplasmic reticulum 0.02 Orthogroups_2024-Update
Pp1s53_157V6 No alias aaa family cdc48 subfamily 0.05 Orthogroups_2024-Update
Sopen01g030300 No alias ATPase family associated with various cellular activities (AAA) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 397 550
IPR003959 ATPase_AAA_core 844 974
IPR031996 NVL2_nucleolin-bd 23 83
No external refs found!