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Aliases : kfl00208_0110_v1.1
Description : (at5g67240 : 239.0) small RNA degrading nuclease 3 (SDN3); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1). & (reliability: 478.0) & (original description: no original description)
Gene families : OG_42_0005455 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005455_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Klebsormidium release: Kfl00208_0110 | |
| Cluster | HCCA clusters: Cluster_80 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.G01183.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Cre01.g036600 | No alias | small RNA degrading nuclease 3 | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G082097 | No alias | small RNA degrading nuclease 3 | 0.04 | Orthogroups_2024-Update | |
| Potri.007G048000 | No alias | small RNA degrading nuclease 3 | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| CC | GO:0005576 | extracellular region | IEP | Predicted GO |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
| BP | GO:0006413 | translational initiation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006869 | lipid transport | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| MF | GO:0008289 | lipid binding | IEP | Predicted GO |
| BP | GO:0042157 | lipoprotein metabolic process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |