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  5. Solyc06g072770

Solyc06g072770


Description : RNA-binding family protein isoform 1 (AHRD V3.3 *** A0A061G6K6_THECC)


Gene families : OG_42_0000513 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000513_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g072770
Cluster HCCA clusters: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G114325 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
MA_26630g0010 No alias (at1g14340 : 137.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
Pp1s100_190V6 No alias nucleic acid binding protein 0.02 Orthogroups_2024-Update
Seita.9G117400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.006G200000.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006788 heme oxidation IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 68
No external refs found!